Skip to main content

Table 7 Correlation of the frequency of methylation at a single locus between reads with duplicates and reads without duplicates

From: BisQC: an operational pipeline for multiplexed bisulfite sequencing

CpG

Without duplicates (9 reads)

With duplicates (23 reads)

1

0.44

0.61

2

0.67

0.74

3

0.11

0.043

4

0.22

0.22

  1. These data sets correspond to the graphic in Figure 10. This Table shows the frequency of methylation at each CpG in the read grouping where duplicates are removed and where duplicates remain. The r2 value associated with these data is 0.95 (N = 4, p = 0.03).
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us