Table 1 Summary of RNA-seq datasets
Soybean line | Jack | FAM94-41 | M23 | N0304-303-3 | R02-6268Â F | R05-4256 | R05-591 | R08-1450 | R95-1705 | Total | Average |
|---|---|---|---|---|---|---|---|---|---|---|---|
Total no. of sequenced reads (in million) | 31.2 | 37.3 | 38.7 | 31.1 | 45.3 | 28.1 | 35.1 | 35.1 | 29.3 | 311.2 | 34.6 |
No. of reads aligned uniquely (in million) | 20.6 | 25.9 | 25.1 | 19.9 | 31.7 | 17.1 | 23.3 | 25.2 | 19.8 | 208.6 | 23.2 |
Percent reads aligned uniquely | 66.1 | 69.5 | 64.9 | 63.9 | 70.0 | 61.0 | 66.6 | 71.7 | 67.7 | - | 66.8 |
Total length of transcripts covered (in million nt) | 63.5 | 76.4 | 70.2 | 65.1 | 80.8 | 66.3 | 77.4 | 75.9 | 72.5 | 130.5 | 72.0 |
Total length of annotated transcripts covered (in million nt) | 49.7 | 54.7 | 53.0 | 49.7 | 57.2 | 49.9 | 55.4 | 52.0 | 52.0 | 69.7 | 52.6 |
Average depth of coverage per transcript nt | 20.0 | 20.8 | 19.7 | 19.8 | 24.7 | 17.9 | 19.3 | 24.8 | 19.1 | - | 20.7 |
Average depth of coverage per annotated transcript nt | 24.6 | 27.7 | 25.1 | 24.9 | 33.4 | 22.7 | 25.7 | 34.4 | 25.4 | - | 27.1 |
No. of genes identified (in thousand) | 33.3 | 33.3 | 33.4 | 33.3 | 33.4 | 33.3 | 33.4 | 33.0 | 33.3 | 33.8 | 33.3 |
No. of annotated genes identified (in thousand) | 32.6 | 32.6 | 32.6 | 32.6 | 32.7 | 32.5 | 32.6 | 32.2 | 32.5 | 32.9 | 32.5 |