Identification and characterization of transcript polymorphisms in soybean lines varying in oil composition and content

Table 6 SNPs in putative acyl lipid genes

Soybean line	Jack	FAM94-41	M23	N0304-303-3	R02-6268 F	R05-4256	R05-591	R08-1450	R95-1705	Total	Average
Total SNP count in annotated genes	414	668	615	618	633	427	467	722	578	1186	571.33
SNPs in annotated exons	379	585	550	548	553	392	413	625	501	1012	505.11
SNPs in annotated UTRs	112	188	162	164	177	127	142	192	168	304	159.11
SNPs in annotated CDS	267	397	388	384	376	265	271	433	333	708	346.00
Non-synonymous SNPs	111	157	156	149	155	100	99	172	146	280	138.33
Synonymous SNPs	156	240	232	235	221	165	172	261	187	428	207.67
SNPs eliminating start codons	1	0	0	0	0	0	0	0	0	1	0.20
SNPs causing premature termination codons	1	1	1	1	0	1	1	1	1	1	0.89
SNPs eliminating termination codons	0	0	0	0	0	0	0	0	0	0	0.00
SNPs in splice sites	1	3	2	2	3	1	0	2	2	5	1.78
SNPs in annotated introns	56	114	88	96	98	58	81	126	103	174	91.11
SNPs overlapping with dbSNP	355	552	524	514	545	363	393	614	489	998	483.22

ISSN: 1471-2164