Skip to main content

Table 2 Highly represented protein families

From: De novo genome assembly of the soil-borne fungus and tomato pathogen Pyrenochaeta lycopersici

 

AN

BC

BG

CG

FO

LM

NC

PL

PTR

SN

P value*

Adjusted P-value**

Genome assembly size ( Mb)

30.0

42.7

87.9

51.6

61.4

44.9

41.0

54.8

37.8

37.3

  

Number of genes

10,827

16,714

7,073

12,361

21,354

12,469

9,730

17,411

12,300

12,382

  

Ankyrin repeats

32

28

9

34

61

12

18

67

24

24

8.90E-04

5.14E-04

D-Tyr-tRNA(Tyr) deacylase

1

1

1

1

1

1

1

5

1

1

NA

NA

DDE superfamily endonuclease

4

12

2

2

13

2

0

89

11

1

1.70E-08

1.47E-07

Double stranded RNA binding domain

1

2

2

2

2

2

2

7

2

0

1.61E-06

2.32E-06

Mo25-like

1

1

1

1

1

1

1

5

1

1

NA

NA

NACHT domain

4

9

0

10

41

4

7

53

3

6

1.90E-04

1.24E-04

NAD-specific glutamate dehydrogenase

0

0

0

0

0

0

0

8

0

0

NA

NA

NB-ARC domain

8

6

0

1

6

0

1

42

6

1

3.69E-08

1.60E-07

NPL4 family

1

1

1

1

1

1

1

5

1

1

NA

NA

Tetratricopeptide repeat

24

17

7

9

20

4

12

76

21

9

2.82E-07

8.14E-07

Transmembrane alpha-helix domain

2

1

0

3

3

1

0

10

4

0

9.52E-06

9.15E-06

Transposase IS4

0

0

0

1

17

0

0

11

0

0

1.28E-02

5.28E-03

hAT family dimerisation domain

0

1

0

0

76

0

0

30

0

0

1.30E-01

4.17E-02

Helix-turn-helix, Psq domain

0

8

0

0

0

0

0

24

0

0

1.01E-06

1.75E-06

Major facilitator superfamily

264

194

36

264

359

150

114

229

189

231

5.21E-01

1.45E-01

Cytochrome P450

116

120

13

138

157

62

40

125

102

122

2.63E-01

7.68E-02

Fungal specific transcription factor domain

232

94

20

176

252

100

77

174

96

100

9.93E-02

3.31E-02

Protein kinase domain

105

94

82

104

146

116

103

170

108

115

2.00E-04

1.24E-04

Heterokaryon incompatibility protein (HET)

7

64

1

51

74

38

61

284

57

98

1.01E-06

1.75E-06

  1. Selected protein families highly represented in P. lycopersici genome. AN, Aspergillus nidulans; BC, Botrytis cinerea; BG, Blumeria graminis; CG, Colletotrichum graminicola; FO, Fusarium oxysporum; LM, Leptosphaeria maculans; NC, Neurospora crassa; PL Pyrenochaeta lycopersici; PTR, Pyrenophora tritici repentis; SN, Stagonospora nodorum. *The cutoff of significance is set at P < 0.05. **Benjamini and Hockberg method was used to calculate adjusted p-values [90].