Deep mRNA sequencing reveals stage-specific transcriptome alterations during microsclerotia development in the smoke tree vascular wilt pathogen, Verticillium dahliae

Table 3 GO enrichment terms of significantly regulated genes during MS1-MS4 stages vs stage CO (p value <0.05)

Terms	FDR^a	P-value	Expression pattern	No. genes^b
Ribonucleoprotein complex biogenesis (GO:0022613)	0.089519378	0.002883868	up	23
Cellular carbohydrate metabolic process (GO:0044262)	0.132284495	0.006317295	up	25
Cellular component biogenesis (GO:0044085)	0.132284495	0.007286858	up	26
Cellular protein metabolic process(GO:0044267)	0.203232906	0.017429065	up	51
Generation of precursor metabolites and energy (GO:0006091)	0.203232906	0.017982239	up	14
Gene expression (GO:0010467)	0.203232906	0.01894544	up	24
Structural molecule activity (GO:0005198)	3.28E-04	1.39E-06	up	25
Peptidase activity (GO:0008233)	0.022419783	1.90E-04	up	27
Motor activity (GO:0003774)	0.233071632	0.022714608	up	4
Oxidoreductase activity (GO:0016491)	0.263043145	0.02675015	up	64
Protein kinase activity (GO:0004672)	0.332984226	0.038095653	up	15
Hydrolase activity (GO:0016787)	0.351323453	0.041682444	up	88
Transport (GO:0006810)	0.587336379	0.012443567	down	19
Transporter activity (GO:0005215)	0.418960736	0.001775257	down	13
Oxidoreductase activity (GO:0016491)	0.454356181	0.003850476	down	20

^aFDR, False discovery rate, adjusted p-value of the test statistics.
^bNumber of genes enrichment in each GO terms among the significantly regulated genes.

ISSN: 1471-2164