Table 3 The 24 gene clusters containing duplicated S . sclerotiorum SPEP genes

Cluster012

7-6

SS1G_01081

BC1G_01968, SS1G_09509, BC1G_01095, SS1G_00547, BC1G_09386, SS1G_09141, SS1G_05689, BC1G_02407, SS1G_06186, BC1G_12856, SS1G_02784, BC1G_13021

Catalase

5SrRNA_AN (41.6)

Cluster022

6-4

SS1G_04468

SS1G_04513, SS1G_09104, SS1G_09671, BC1G_12617, BC1G_09286, SS1G_09338, BC1G_00394, SS1G_14236, BC1G_00455

Glycoside hydrolase family 47 protein

Helitron-2_PSt (47.3)

Cluster035

5-4

SS1G_10949

BC1G_01945, SS1G_12508, SS1G_12939, BC1G_02687, BC1G_11888, BC1G_10788, SS1G_01984, SS1G_14293

Glucose oxidase

BOTY_LTR (0.8)

Cluster047

4-3

SS1G_11700

SS1G_08020, BC1G_05350, BC1G_01594, SS1G_11304, BC1G_11407, SS1G_05897

Glycoside hydrolase family 18 protein

BOTY_LTR (1.0)

Cluster051

6-1

SS1G_13371

BC1G_04114, SS1G_12365, SS1G_03721, SS1G_14379, SS1G_11693, SS1G_10104

-

Tad1-14_BG (1.1)

Cluster057

4-2

SS1G_05454

BC1G_01964, SS1G_12510, SS1G_00677, SS1G_00773, BC1G_00533

Glycosyl hydrolases family 18 protein

BOTY_LTR (0.9)

Cluster080

3-2

SS1G_05073

BC1G_10397, SS1G_10773, BC1G_07160, SS1G_13589

-

BOTY_LTR (5.8)

Cluster094

3-2

SS1G_09630

SS1G_03681, SS1G_10564, BC1G_10623, BC1G_03527

Pyrroline-5-carboxylate reductase

BOTY_LTR (3.6)

Cluster167

2-1

SS1G_13935

BC1G_12793, SS1G_13934

CFEM domain containing

BOTY_LTR (9.6)

Cluster169

2-1

SS1G_02369

SS1G_00501, BC1G_00594

Xyloglucan-specific endo-betaglucanase A

BOTY_LTR (0.5)

Cluster170

2-1

SS1G_04264, SS1G_12024

BC1G_15278

Cell wall glucanase

BOTY_LTR (13.0) – Gypsy-31_ADe-I ( 35.9)

Cluster171

2-1

SS1G_13501

BC1G_06328, SS1G_03093

Bacterial alpha-L-rhamnosidase domain protein

Harbinger-5_PSt (1.8)

Cluster175

2-1

SS1G_10092, SS1G_03618

BC1G_03590

Endo-beta-xylanase

BOTY_LTR (3.9) - BOTY_LTR (11.4)

Cluster176

2-1

SS1G_04958, SS1G_09225

BC1G_01026

Tripeptidyl peptidase sed3

BOTY_LTR (1.1) - Mariner-3_AF (5.9)

Cluster181

2-1

SS1G_07498, SS1G_01811

BC1G_06353

Glucose-methanol-choline oxidoreductase

BOTY_LTR (18.2) - BOTY_LTR (0.6)

Cluster182

3-1

SS1G_12509

SS1G_00772, SS1G_05453

LysM domain protein

Mariner-3_AF (8.1)

Cluster186

2-1

SS1G_04200

BC1G_00245, SS1G_01334

Alpha-mannosidase family protein

BOTY_LTR (2.2)

Cluster187

2-1

SS1G_04207

BC1G_00240, SS1G_04205

Polygalacturonase

BOTY_LTR (3.4)

Cluster196

2-1

SS1G_05273

SS1G_11068, BC1G_09997

Amidase family protein

BOTY_LTR (28.8)

Cluster203

2-1

SS1G_03160

SS1G_00233, BC1G_07555

Autophagy related lipase

BOTY_LTR (1.2)

Cluster204

2-1

SS1G_08110, SS1G_12361

BC1G_12374

-

5SrRNA_AN (2.3) - Tad1-14_BG (1.8)

Cluster206

2-1

SS1G_08104

SS1G_09795, BC1G_12379

Acetyl xylan esterase

5SrRNA_AN (6.2)

Cluster214

2-1

SS1G_00446

BC1G_00660, SS1G_05782

Heterokaryon incompatibility Het-c domain protein

SINE3-2_AO (5.4)

Cluster220

2-1

SS1G_05461

BC1G_06146, SS1G_13907

Thioesterase-like domain protein

TGATGAA)n (0.3)