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Table 1 Genetic features of 1046 SNPs screened from a subset of 1152 SNP markers for five rice populations

From: Genomic regions involved in yield potential detected by genome-wide association analysis in Japanese high-yielding rice cultivars

 

Adjusted sample size (n = 14)

 

Sample size

MAF

Heterozygosity

PIC

MAF

Heterozygosity

PIC

All

126

0.338

0.010

0.335

   

HY

35

0.307

0.010

0.318

0.299

0.010

0.307

PO

14

0.264

0.010

0.279

0.264

0.010

0.279

PD

29

0.150

0.008

0.160

0.142

0.008

0.150

Indica

24

0.106

0.011

0.119

0.104

0.010

0.115

Japonica

24

0.198

0.013

0.213

0.196

0.013

0.210

  1. MAF, minor allele frequency; PIC, polymorphism information content.
  2. HY, high-yielding cultivar; PO, parental cultivar (overseas); PD, parental cultivar (domestic).