Table 3 Comparison of SNP and candidate gene allele types in regions associated with significant trait differences

7

Ghd7 promoter (S_555)^a

9.15

T

T

T

T

C

T

7

Ghd7 ^b

9.15

122

G ^c

G

G

G

E

G

7

Ghd7 ^b

9.15

136

S

S

S

S

G

S

7

Ghd7 ^b

9.15

174

V

V

V

V

D

V

7

Ghd7 ^b

9.15

233

A

A

A

A

P

A

7

NIAS_Os_ac07000274

10.15

G

G

G

G

T

G

7

NIAS_Os_ab07000535

11.63

C

C

C

C

C

C

12

NIAS_Os_aa12004348

9.10

G

G

G

T

T

G

12

Pi-ta ^d

10.61

148

R

R

R

S

S

R

12

Pi-ta ^d

10.61

158

H

H

H

Q

Q

H

12

Pi-ta ^d

10.61

176

D

D

D

V

V

D