Skip to main content

Table 1 Coverage estimates and orphaned reads mapping statistics

From: Discovery of transgene insertion sites by high throughput sequencing of mate pair libraries

Categories

SOD1-G93A (PE)*

Prp-TDP43A315T(PE)

SOD1-G93A (MP)*

Prp-TDP43A315T(MP)

Total number of reads

478630820

474440050

900015938

822321006

Quality filtered reads

370691294

369292346

675672452

662089438

Raw coverage#

17.73

17.57

33.33

30.46

Analysis coverage#

13.73

13.68

25.02

24.52

Orphaned reads mapped to Mus

388

2371

8034

8386

Reads found in the candidates insertion site region

3

5

113

99

  1. *PE: Paired end library.
  2. *MP: Mate-pair library.
  3. #Raw coverage corresponds to the sequencing reads generated from machine. Analysis coverage is calculated from quality filtered reads and this dataset is used for insertion site discovery.