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Table 3 List of transcripts used during evaluation of platforms

From: Evaluation of high throughput gene expression platforms using a genomic biomarker signature for prediction of skin sensitization

Gene symbol

Entrez gene ID

DELTAGene™ assay ID

NanoString® probe ID

Life technologies™ assay ID

ADAM20

8748

GEP00055625

NM_003814.4:1420

Hs01083178_s1

CD33

945

GEP00055628

NM_001177608.1:730

Hs00233544_m1

CD86

942

GEP00055621

NM_175862.3:1265

Hs01567026_m1

CD93

22918

GEA00016079

NM_012072.3:4270

Hs00362607_m1

DHCR24

1718

GEA00025118

NM_014762.2:975

Hs00207388_m1

DHX33

56919

GEP00055629

NM_001199699.1:2873

Hs01063767_m1

FAS

355

GEP00055622

NM_152876.1:1740

Hs00907759_m1

FASN

2194

GEA00032375

NM_004104.4:5387

Hs00188012_m1

FDXR

2232

GEA00028039

NM_004110.3:1123

Hs01031618_g1

GDAP2

54834

GEA00028183

NM_001135589.1:640

Hs00214424_m1

GDF11

10220

GEA00006411

NM_005811.3:3590

Hs00195156_m1

GNL3L

54552

GEA00029786

NM_001184819.1:1935

Hs00535521_m1

HIST1H3J

8356

GEA00014232

NM_003535.2:364

Hs00361917_s1

HMGCS1

3157

GEA00026981

NM_002130.4:420

Hs00940429_m1

HNRNPL

3191

GEA00029122

NM_001533.2:757

Hs00704853_s1

LY96

23643

GEP00055624

NM_015364.2:360

Hs01026734_m1

MAPK13

5603

GEP00055633

NM_002754.3:1050

Hs00559623_m1

MTR

4548

GEA00030234

NM_000254.2:6816

Hs00299285_s1

NQO1

1718

GEA00013124

NM_000903.2:790

Hs02512143_s1

OR5B21

219968

GEA00014658

NM_001005218.1:292

Hs02339238_s1

PFAS

5198

GEA00032277

NM_012393.2:4655

Hs00389822_m1

PHLDA3

23612

GEA00015249

NM_012396.3:532

Hs01926548_s1

RFC2

5982

GEP00055631

NM_181471.1:835

Hs00945948_m1

SFPQ

6421

GEP00055626

NM_005066.2:1995

Hs00192574_m1

SLC37A4

2542

GEP00055634

NM_001164277.1:1248

Hs00184616_m1

SQLE

6713

GEP00055620

NM_003129.3:250

Hs01123768_m1

TLR6

10333

GEA00012581

NM_006068.2:2530

Hs00271977_s1

TMEM97

27346

GEP00055627

NM_014573.2:2055

Hs00299877_m1

TXNRD1

7296

GEA00013820

NM_001093771.1:1009

Hs00917067_m1

ABCB4

5244

GEP00055630

NM_018849.2:2125

Hs00240956_m1

GAPDH

2597

GEP00055153

NM_002046.3:972

Hs03929097_g1

HPRT1

3251

GEP00055483

NM_000194.1:240

Hs99999909_m1

  1. A set of 30 transcripts from the GPS was analyzed on all three platforms. Transcripts are listed by gene symbol, Entrez Gene ID, DELTAGene™ assay ID, NanoString® probe ID and Life Technologies™ Assay ID. In addition to transcripts from the GPS, three reference transcripts, ABCB4, GAPDH and HPRT1 were analyzed on the evaluated platforms and used for normalization of data.