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Table 2 General genome features of Hif KR494 and the reference H. influenzae and Haemophilus spp. strains

From: Comparative genomic analysis reveals distinct genotypic features of the emerging pathogen Haemophilus influenzae type f

 

H. influenzae

H. aegyptius

H. haemolyticus

H. parainfluenzae

Strain

KR494

10810

RD Kw20

3655

ATCC 11116

M21639

ATCC 33392

Serotype

f

b

d

nontypeable

-

-

-

GenBank accession

CP005967

NC_016809

NC_000907

AAZF01000000

AFBC00000000

AFQR01000000

AEWU01000000

Length (bp)

1856176

1981535

1830138

1878368

1915025

2328161

2110314

Whole genome GC content (%)

38.05

38.14

38.15

38.02

38.08

38.59

39.18

Genes GC content (%)

38.68

38.76

38.83

38.75

39.00

39.33

39.83

Coding content (%)

88.54

87.29

84.66

89.38

90.07

74.29

91.59

Genes avg. length (bp)

913

910.79

935.59

870.79

856

887.6

962.55

Total CDS number

1742

1903

1657

1929

2020

2224

2010

Strain-specific CDS a

-

408

199

448

553

773

644

Common CDS b

-

1495

1458

1481

1487

1451

1366

Unique CDS in Hif KR494 as compared to the other strains c

-

247

284

261

255

292

376

  1. aCDS number of each strain or species that was less conserved (protein sequence <85% similarity) or absent in the Hif KR494 genome.
  2. bCDS number of each strain or species that was conserved and homologous to the Hif KR494 genome (protein sequence ≥85% similarity).
  3. cNumber of CDS in Hif KR494 that were less conserved or absent as compared to the reference genomes (protein sequence <85% similarity).