Table 2 Genome sequencing statistics of the entire PP1Y genome
| Â | Chr | Mpl | Lpl | Spl |
|---|---|---|---|---|
Genome | Â | Â | Â | Â |
Size, bp | 3,911,486 | 1,161,602 | 192,103 | 48,714 |
G + C content, % | 63.7 | 62.3 | 60.7 | 60.1 |
Copies for each bacterial cell | 1 | 1 | 1 | 2 |
ORFs | Â | Â | Â | Â |
Number | 3,481 | 975 | 199 | 54 |
Minimum length, bp | 100 | 100 | 100 | 100 |
Average length, bp | 990 | 1,059 | 788 | 776 |
Maximum length, bp | 7,749 | 3,597 | 4,479 | 5,748 |
ATG initiation codons, % | 86.8 | 88.4 | 76.4 | 81.5 |
GTG initiation codons, % | 8.8 | 7.5 | 12.0 | 7.4 |
TTG initiation codons, % | 4.4 | 4.1 | 11.6 | 11.1 |
% of coding sequence | 88.1 | 88.9 | 81.6 | 86.0 |
Repetitive elements | Â | Â | Â | Â |
Prophage elements | 5 | 1 | 1 | 1 |
IS elements | 3 | 5 | 7 | 0 |
RNAs | Â | Â | Â | Â |
rRNA (16S-23S-5S) | 3 | 0 | 0 | 0 |
tRNAs | 58 | 0 | 0 | 0 |
Other RNA elements* | 15 | 0 | 3 | 0 |
Cobalamin riboswitches | 5 | 0 | 1 | 0 |
suhB | 3 | 0 | 0 | 0 |
SRP_bact | 1 | 0 | 0 | 0 |
Rnase P clA | 1 | 0 | 0 | 0 |
tmRNA | 1 | 0 | 0 | 0 |
TPP riboswitch | 1 | 0 | 0 | 0 |
ctRNA p42d | 1 | 0 | 0 | 0 |
Glycine riboswitch | 1 | 0 | 0 | 0 |
LR-PK1 | 1 | 0 | 0 | 0 |
GroupII catalytic introns | 0 | 0 | 1 | 0 |
ROSE | 0 | 0 | 1 | 0 |