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Table 2 B. thailandensis sRNAs identified from microarray analysis of expression in IGRs

From: Differential expression of small RNAs from Burkholderia thailandensis in response to varying environmental and stress conditions

 

Expressed region

Fold change

  BLAST

sRNA

Chr

5′ Locus

Genes

Length

First probe

Last probe

Antibiotic

distribution

BTH_s1

1

BTH_I0225

><

151

259648

259799

0.45

Btpm

BTH_s2

1

BTH_I0498

<>

147

553257

553404

0.74

Btpm

BTH_s3

1

BTH_I0572

><

50

652705

652755

−0.56

Bt

BTH_s4

1

BTH_I0629

<>

77

725000

725077

−1.53

Bt

BTH_s5

1

BTH_I0805

><

72

919535

919607

−0.72

Bt

BTH_s6

1

BTH_I0981

><

92

1114896

1114988

−0.83

Bt

BTH_s7

1

BTH_I0986

>>

187

1123855

1124042

0.34

Bt

BTH_s8

1

BTH_I1002

<<

57

1139418

1139475

−0.09

Bt

RnaseP

1

BTH_I1231

><

413

1381221

1381634

−0.03

conserved

BTH_s10

1

BTH_I1420

>>

50

1603625

1603675

1.79

Bt

BTH_s11

1

BTH_I1430

>>

304

1614533

1614837

−0.31

Btpm

BTH_s12

1

BTH_I1458

><

30

1655354

1655384

−3.91

Btpm

BTH_s13

1

BTH_I1526

<>

283

1728308

1728591

1.98

Btpm+

BTH_s14

1

BTH_I1552

<>

263

1754006

1754269

−1.13

Btpm

BTH_s15

1

BTH_I1641

>>

161

1850688

1850849

−0.44

Btpm+

BTH_s16

1

BTH_I1756

<>

122

1967019

1967141

1.98

Btpm

BTH_s17

1

BTH_I1826

>>

184

2052202

2052386

−0.48

Btpm

BTH_s18

1

BTH_I1973

><

29

2237631

2237660

−0.60

Bt

BTH_s19

1

BTH_I2094

<>

127

2372778

2372905

1.84

Btpm+

small SRP

1

BTH_I2218

<>

14

2494993

2495007

−0.55

conserved

BTH_s21

1

BTH_I2685

>>

51

3066928

3066979

1.83

Bt

BTH_s22

1

BTH_I2764

><

34

3174991

3175025

0.02

Bt

BTH_s23

1

BTH_I2791

><

194

3207088

3207282

−0.97

Bt

BTH_s24

1

BTH_I2908

>>

67

3344035

3344102

0.51

Btpm+

BTH_s25

1

BTH_I3195

<>

54

3642110

3642164

−1.32

Btpm+

BTH_s26

2

BTH_II0111

<>

59

126516

126575

−0.05

Bt

BTH_s27

2

BTH_II0236

>>

88

287804

287892

1.70

Btpm

BTH_s28

2

BTH_II0378

>>

230

448466

448696

−0.39

Btp

BTH_s29

2

BTH_II0540

>>

169

641739

641908

1.94

Btpm

BTH_s30

2

BTH_II0674

>>

128

789481

789609

0.00

Btpm+

BTH_s31

2

BTH_II0686

>>

143

803355

803498

−1.24

Btpm+

BTH_s32

2

BTH_II0954

<<

38

1133460

1133498

0.08

Bt

BTH_s33

2

BTH_II1164

><

52

1355194

1355246

−0.29

Btpm

BTH_s34

2

BTH_II1180

><

113

1380009

1380122

−0.95

Bt

BTH_s35

2

BTH_II1417

>>

133

1672484

1672617

3.91

Btpm

BTH_s36

2

BTH_II1508

>>

104

1778103

1778207

4.57

Btpm

BTH_s37

2

BTH_II1685

<<

99

2043861

2043960

−0.71

Bt

BTH_s38

2

BTH_II1727

>>

183

2091083

2091266

−0.97

Bt

BTH_s39

2

BTH_II2030

><

70

2477704

2477774

0.16

Btpm+

BTH_s40

2

BTH_II2171

><

107

2670574

2670681

−0.29

Bt

  1. Fold change in response to antibiotics is depicted in Log 2. For BLAST distribution, Bt – found only in B. thailandensis; Btp – found in B. thailandensis and B. pseudomallei; Btpm – found in B. thailandensis, B. pseudomallei, and B. mallei; Btpm + - found in B. thailandensis, B. pseudomallei, B. mallei, and at least one other additional Burkholderia species; and conserved – found in all 16 Burkholderia strains tested, including B. thailandensis, B. pseudomallei, B. mallei, B. phytofirmans, B. phymatum, B. phenoliruptrix, B. xenovorans, B. rhizoxinica, B. gladioli, B. glumae, B. vietnamiensis, B ambifaria, B. cenocepacia, B multivorans, and Burkholderia sp.
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BMC Genomics

ISSN: 1471-2164

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