Table 3 Target predictions with q-value < 0.5 from CopraRNA and details of the top significant matches
sRNA# | Total | Target | q-value | Energy | sRNA | mRNA | Definition |
|---|---|---|---|---|---|---|---|
1 | 5 | BTH_I0117 | 0.03528 | −23.340 | 164..191 | −56..-27 | gp31 |
BTH_I1738 | 0.04661 | −24.158 | 159..185 | 5..29 | hypothetical protein | ||
BTH_II0675 | 0.04661 | −22.376 | 164..192 | −79..-54 | aspartate-semialdehyde dehydrogenase Asd | ||
BTH_II1093 | 0.07311 | −15.108 | 159..185 | −170..-140 | Ser/Thr protein phosphatase | ||
BTH_I2063 | 0.07311 | −20.982 | 163..189 | 15..47 | L D-carboxypeptidase A LdcA | ||
13 | 43 | BTH_I1527 | 0.00000 | −10.280 | 273..298 | −69..-47 | transglycosylase SLT domain-containing protein |
BTH_I1319 | 0.00341 | −24.103 | 133..193 | −128..-73 | tRNA delta(2)-isopentenylpyrophosphate transferase MiaA | ||
BTH_II1420 | 0.04465 | −13.661 | 250..260 | 8..18 | hypothetical protein | ||
BTH_I0403 | 0.04465 | −17.257 | 201..238 | −32..16 | hypothetical protein | ||
BTH_I0216 | 0.05922 | −13.297 | 50..88 | −43..1 | ATP-dependent protease domain-containing protein | ||
BTH_I0248 | 0.06071 | −13.886 | 159..190 | −43..-14 | flagellar rod assembly protein/muramidase FlgJ | ||
BTH_I0386 | 0.09037 | −15.127 | 175..210 | −158..-122 | lipoyl synthase LipA | ||
BTH_I1901 | 0.09529 | −12.224 | 386..423 | 36..77 | phosphoesterase | ||
BTH_II1524 | 0.19532 | −11.366 | 298..319 | −65..-46 | acetyltransferase | ||
BTH_II0792 | 0.28030 | −13.522 | 159..200 | −64..-28 | endo-1 4-D-glucanase | ||
19 | 52 | BTH_I2095 | 0.00000 | −15.900 | 60..73 | −53..-40 | hypothetical protein |
BTH_I2094 | 0.00002 | −63.187 | 1..47 | −199..-153 | osmolarity response regulator OmpR | ||
BTH_I0740 | 0.10640 | −22.588 | 16..86 | 16..96 | 3-deoxy-manno-octulosonate cytidylyltransferase KdsB | ||
BTH_II0267 | 0.10640 | −21.664 | 179..222 | −56..-10 | rhsD protein | ||
BTH_I1820 | 0.10640 | −23.421 | 16..86 | 16..94 | histidine ammonia-lyase HutH | ||
BTH_I3024 | 0.12057 | −28.055 | 123..217 | −9..86 | shikimate kinase AroK | ||
BTH_II0267 | 0.14266 | −21.664 | 179..222 | −56..-10 | rhsD protein | ||
BTH_II2237 | 0.14266 | −18.893 | 61..77 | −176..-160 | MmgE/PrpD family protein | ||
BTH_I2472 | 0.14266 | −18.732 | 28..82 | −63..-1 | ribose operon repressor RbsR | ||
BTH_I2817 | 0.16248 | −17.933 | 177..220 | −197..-156 | short chain dehydrogenase | ||
36 | 4 | BTH_II1509 | 0.00117 | −14.418 | 67..87 | −25..-4 | MgtC family protein |
BTH_I0673 | 0.43725 | −40.259 | 19..86 | −186..-115 | DNA-binding response regulator | ||
BTH_II1525 | 0.43725 | −28.046 | 51..87 | −88..-52 | transporter | ||
BTH_I3260 | 0.43725 | −17.695 | 20..87 | −135..-78 | ATP-dependent DNA helicase Rep | ||
39 | 13 | BTH_I3274 | 0.00865 | −13.184 | 87..121 | −160..-130 | phage integrase family site specific recombinase |
BTH_I0763 | 0.05339 | −12.897 | 61..98 | −132..-97 | ATP-dependent Clp protease ATP-binding subunit ClpA | ||
BTH_I1300 | 0.11325 | −8.769 | 115..122 | 64..71 | DNA repair protein RecN | ||
BTH_I1594 | 0.21103 | −11.949 | 82..105 | 63..86 | cold-shock domain-contain protein | ||
BTH_I3232 | 0.21103 | −9.560 | 117..125 | 54..62 | phage integrase family site specific recombinase | ||
BTH_I1062 | 0.26265 | −17.617 | 67..83 | 47..64 | NADH dehydrogenase subunit B | ||
BTH_I0425 | 0.26265 | −13.815 | 87..121 | −109..-70 | hypothetical protein | ||
BTH_I2768 | 0.28525 | −8.492 | 61..83 | 69..94 | phosphate regulon transcriptional regulatory protein PhoB | ||
BTH_I1282 | 0.38899 | −9.640 | 4..12 | −83..-75 | catalase/peroxidase HPI | ||
|  |  | BTH_II0671 | 0.48561 | −12.524 | 112..127 | 27..46 | bkd operon transcriptional regulator |