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Table 3 Genes which were up regulated in small atretic follicles with respect to healthy follicles †

From: Transcriptome profiling of granulosa cells from bovine ovarian follicles during atresia

Gene symbol

Fold change

Gene symbol

Fold change

Gene symbol

Fold change

Cell Cycle and DNA replication

CDKN1C

40.2

RGCC

5.1

IFITM3

3.3

MICAL1

8.9

TOP1

5.1

DYNLT3

3.1

CDC37L1

5.9

RAD52

3.5

BAZ1A

3.0

TOPORS

5.7

KLC1

3.4

  

Cell Death

TNFRSF12A

10.4

*PHLDA1

4.7

TNFRSF25

3.4

CFLAR

6.0

PDCD4

3.9

TNFRSF1A

3.2

TNFRSF6B

5.9

FAIM

3.8

PDCD10

3.1

Cell Morphology

MAP1LC3C

16.7

APBB1IP

4.6

SNTB2

4.0

CAPG

11.1

MAP2

4.5

MTMR3

3.8

TAGLN

10.8

CNN1

4.4

LMNA

3.5

DBNDD2

9.2

AIF1L

4.4

ABLIM1

3.5

NDRG1

9.0

VCL

4.3

FHOD3

3.4

SYNE1

7.6

WASL

4.3

MARCKSL1

3.2

CLDN5

6.3

CDH1

4.3

MAP9

3.2

SVIL

6.1

ACTA2

4.3

MICAL2

3.1

MICALL2

6.1

TAGLN2

4.3

ELMO1

3.1

FILIP1L

5.6

FSCN1

4.2

ELMO2

3.1

ARPC1B

5.5

FNBP1L

4.1

*ARF5

3.1

FERMT2

5.4

TLN1

4.1

TPGS1

3.0

GSN

5.3

ACTN1

4.1

B9D2

3.0

TUBB6

5.1

DSTN

4.0

FBLIM1

3.0

CAV1

4.6

RILPL2

4.0

  

Cytokines, Hormones and Receptors

PDGFRA

26.5

IGF2R

6.2

CD302

3.7

SCG2

24.4

ELTD1

6.1

JAG1

3.6

CTGF

23.4

TSPO

5.7

IL10RA

3.6

DKK3

17.4

IGFBP6

5.1

PTPRK

3.6

XCL1

16.7

IGF2

5.0

PLXND1

3.6

SPP1

14.1

TGFBR2

5.0

CMTM3

3.5

OLR1

11.7

MIA3

4.6

IL17RA

3.5

MDK

9.9

IFI30

4.5

NR4A2

3.5

IL18

8.9

IGFBP5

4.3

ANGPTL4

3.4

PRICKLE1

8.2

EFNA4

4.2

EFNA5

3.3

BAMBI

7.6

NR2F1

4.1

GPRC5B

3.3

NDP

7.6

ADM

3.9

GPR155

3.3

GNG2

7.3

PLXNB2

3.8

ACVR1

3.1

PLAUR

6.7

*PVRL2

3.8

SCG5

3.1

BMP2

6.6

    

Directional Cell Growth

SLITRK2

4.3

ROCK2

3.8

ROCK1

3.3

Extracellular Matrix and Synthesis

*SPOCK2

23.8

TNFAIP6

7.1

COL18A1

4.0

*NID2

18.5

LOXL4

6.5

*FN1

3.9

*LEPREL1

12.8

LUM

6.1

FBN1

3.8

LAMB1

12.0

COL3A1

5.5

COL4A5

3.5

DCN

11.1

COL1A2

5.3

SPON2

3.5

MGP

9.5

PCOLCE2

4.6

SDC4

3.4

SDC2

9.0

COL4A1

4.5

COL12A1

3.4

FBLN2

8.7

AGRN

4.1

COL6A1

3.2

COL5A2

8.3

    

Intercellular and Cell to Matrix Adhesion

KRT18

62.4

CLDN1

10.2

MAGI3

4.6

KRT8

53.2

CD9

7.1

AMIGO2

4.5

PTX3

24.1

PCDH7

7.0

ANTXR2

3.7

THBS2

23.9

FLNB

6.6

SPARC

3.6

LGALS3

22.9

MAGI1

6.0

CADM1

3.3

*CD24

17.1

VMP1

5.3

JAM3

3.2

CYR61

14.1

CLDN11

4.9

CCDC80

3.0

CALD1

11.6

    

Ion Transport

KCNMB4

5.7

CACNB3

4.0

KCTD10

3.8

GPM6A

4.8

CLCA4

3.9

SEPP1

3.7

CLIC4

4.5

SCN5A

3.9

KCNJ2

3.7

Protein Trafficking

ANXA1

10.9

SCG3

4.0

PLEKHB2

3.6

GABARAPL1

6.2

CHMP5

3.7

SCAP

3.4

GIT2

4.4

MVP

3.7

PLEKHG2

3.3

SH3RF1

4.0

    

Proteolysis or Inhibition

TIMP1

68.9

CAST

6.7

CTSZ

3.5

PLAT

26.5

ADAMTS1

6.1

FBXO32

3.3

SERPINE1

19.3

C1S

5.9

TIMP2

3.3

PRSS23

10.9

CTSH

4.7

CTSK

3.2

CSTB

9.3

MMP11

4.4

CTSB

3.2

RELN

7.7

CTSS

4.4

KLHL36

3.2

MMP23B

7.7

CFD

3.8

SERPINB2

3.1

SERPINB8

7.4

PSMB1

3.5

LYZ

3.0

RNA Processing

PRPF38B

7.1

RBM25

3.9

SNRNP200

3.2

RBMS2

6.3

DDX5

3.7

HNRNPH3

3.2

RBM24

4.6

SYNCRIP

3.6

CPEB4

3.2

RBM17

4.5

DDX42

3.6

EBNA1BP2

3.1

TDRD7

4.3

INTS7

3.3

GEMIN8

3.1

REXO2

4.0

CWC22

3.2

  

Transcription Regulation

ANKRD1

48.9

TAX1BP3

4.8

LEF1

3.4

FOSL2

11.7

*MLL3

4.7

TGIF1

3.4

EGR1

11.3

MTPN

4.6

MPHOSPH8

3.4

ATF3

9.7

EPAS1

4.6

MORF4L2

3.3

BCL6

8.6

FOXP1

4.5

MAFK

3.3

ATRX

8.4

ING4

4.4

CSRNP1

3.3

ID1

7.4

GTF2F2

4.4

LARP7

3.3

USF1

6.8

SMAD3

4.3

GTF2E2

3.3

KLF6

6.5

STAT3

4.3

GTF2H4

3.3

RBFOX2

6.5

SERTAD1

4.3

BASP1

3.3

JUN

6.4

HHEX

4.2

LEO1

3.3

CEBPD

6.0

ZNF398

4.2

TCF3

3.3

ID3

5.8

HMBOX1

4.0

ZMIZ2

3.2

*TCF7L2

5.8

PDLIM1

3.9

NFKBIA

3.2

HDAC7

5.8

ZFP36L1

3.9

ZC3H8

3.2

NMI

5.7

JUNB

3.9

OSTF1

3.2

SNAI2

5.7

E4F1

3.9

CIR1

3.2

ZNF292

5.7

ZNF281

3.8

ZNHIT3

3.1

LITAF

5.6

FOS

3.7

GPS2

3.1

CITED2

5.6

FHL2

3.7

CSDC2

3.1

CTR9

5.5

CYLD

3.7

KHDRBS1

3.0

*CEBPD

5.4

TRANK1

3.6

ILF3

3.0

KANK2

5.1

FOXO1

3.6

ANKRD10

3.0

NFIL3

5.0

*CPEB2

3.6

  

JARID2

4.9

SCAND1

3.5

  

MXI1

4.9

HDAC5

3.5

  

Translation Regulation

MRPS28

3.6

EIF4G3

3.2

EIF2AK4

3.2

EIF2AK4

3.5

    

Transport

APOD

37.5

SLC25A29

4.2

RBP1

3.4

STAR

22.5

STAU1

4.1

TCN2

3.4

SLC17A5

9.0

VPS13B

4.1

SLC25A17

3.4

FABP5

8.9

STEAP1

4.0

CYTH3

3.4

A2M

8.1

RABEP1

3.9

SYT11

3.2

NNAT

7.8

*ABCB1

3.8

FABP4

3.1

SLC40A1

7.2

CRABP2

3.7

AP1S2

3.1

VAT1

6.8

STARD3NL

3.7

NPC2

3.0

SLC39A8

5.2

ANKH

3.6

SNX9

3.0

Other Enzymes

*VNN1

15.1

PNMT

4.1

RAB31

3.2

*PDK4

9.7

HSP90AA1

4.0

PTPRN2

3.2

GFPT2

7.8

RAP2C

4.0

RIOK2

3.2

QSOX1

5.9

SETD7

4.0

RNF20

3.2

DDAH2

5.5

CHST2

4.0

LHFPL2

3.2

GLRX

5.4

SMS

3.8

PTPN21

3.2

PLSCR4

5.4

NT5E

3.8

RAB7A

3.1

ENPP5

4.9

MARCKS

3.7

DDAH1

3.1

PYGL

4.9

GDPD1

3.6

PPIE

3.1

CA2

4.8

DUSP7

3.6

ARF5

3.1

RPIA

4.7

EGLN1

3.5

RBKS

3.1

PELI1

4.7

ZNRF1

3.4

UST

3.1

MYCBP2

4.6

NAGK

3.4

ENO2

3.1

CPT1A

4.5

MGST2

3.4

RNF8

3.1

GEM

4.4

B4GALT5

3.4

PLCL2

3.0

PIGT

4.3

RAB22A

3.3

DPH5

3.0

DUSP1

4.3

ALDH1A1

3.3

IP6K2

3.0

PXDN

4.2

    

Other Signalling

*RND3

35.7

EFHD2

5.8

SHISA2

3.9

*DCLK1

19.5

JAK1

5.7

RALA

3.9

GAL

10.6

VAV2

5.6

CSNK2A1

3.7

POSTN

9.9

INSIG2

5.4

BMPER

3.7

ARHGEF11

9.9

WDR44

5.0

ARHGAP32

3.5

TP53INP1

8.9

STK17A

5.0

S100A11

3.3

LMTK2

8.1

PTPN5

4.6

UACA

3.2

SH3BP5

7.5

WHSC1L1

4.5

ERBB2

3.2

GIMAP8

7.5

IRAK1BP1

4.4

FYN

3.2

SH3KBP1

7.4

CFH

4.4

CORO1A

3.2

ARHGEF3

7.1

IFITM1

4.3

BCAR1

3.1

RSPO3

7.1

PIK3CA

4.3

DOCK5

3.1

CD200

7.0

DAB2

4.3

PIK3CD

3.1

PLIN2

6.6

CSNK1G2

4.2

STK38L

3.1

PKIB

6.5

MERTK

4.1

MAP2K3

3.1

FBXO33

6.2

RASA2

4.1

TYRO3

3.1

CD55

6.2

PIM1

4.0

CARD10

3.1

ERRFI1

6.1

    

CD99

6.0

    

DAPP1

5.8

    

Other

C8orf4

37.2

RCN2

4.4

CBLB

3.6

SATL1

15.2

KIAA1598

4.4

ASCC2

3.5

WDFY4

11.1

FAM126B

4.4

FAM32A

3.5

PLXDC2

9.1

ZNF317

4.2

OCIAD2

3.5

LUC7L3

8.9

C1orf35

4.2

SAFB2

3.5

ZNF462

7.5

RASAL2

4.2

ALKBH4

3.4

NTN4

7.3

AKAP8L

4.1

TSC22D3

3.4

KIAA0408

7.2

DENND3

4.1

IRGQ

3.4

RSRC2

7.1

C1QTNF6

4.1

AUTS2

3.4

C10orf10

7.0

CCDC85B

4.1

GATSL2

3.4

PHF3

6.4

ARHGEF2

4.0

COMMD4

3.4

SDE2

6.3

MAP1B

4.0

MLLT11

3.3

BTBD3

6.1

C3orf19

4.0

ZFYVE1

3.3

TMEM14A

5.9

CUL9

4.0

PPFIBP1

3.3

ODF2L

5.8

MAP7D1

3.9

FAM129B

3.3

MXRA8

5.8

MTA3

3.9

FLRT2

3.3

GLIPR2

5.6

LIMCH1

3.9

PRRC2C

3.2

NDRG4

5.6

KLHL24

3.9

GPN3

3.2

TMEM176A

5.4

CXorf26

3.9

MESDC1

3.2

MXRA5

5.3

SHF

3.9

ARMCX3

3.2

CRYAB

5.1

YPEL5

3.9

SNN

3.2

C7orf41

4.9

PQLC3

3.9

KIAA0922

3.2

ZNF608

4.9

TMTC2

3.9

TCP11L2

3.2

KLHL28

4.9

HECA

3.8

ANKRD11

3.2

PLEKHO1

4.8

C9orf3

3.8

C1orf212

3.1

TACC2

4.8

LRCH1

3.8

TMEM176B

3.1

GOLPH3L

4.8

DPH3

3.7

SYAP1

3.1

ERRFI1

4.7

CD83

3.7

METRNL

3.1

SRP14

4.7

CTTNBP2NL

3.7

FAM160A2

3.1

ZDHHC23

4.7

TES

3.7

MEF2BNB

3.1

EML1

4.7

GLTSCR2

3.7

C5orf30

3.1

ANXA2

4.7

CLU

3.6

ATG14

3.1

ZNF521

4.6

LHFP

3.6

BOD1L1

3.1

PDLIM4

4.6

PKIG

3.6

DEFB4A

3.0

KIAA0232

4.4

LSG1

3.6

C17orf101

3.0

C12orf75

4.4

    
  1. Differentially regulated genes (> 3 fold, P < 0.05) were annotated based on the Entrez Gene database. Genes are listed in descending order of fold change within each functional category.
  2. † Benjamini-Hochberg post-hoc test for multiple corrections following one way ANOVA.
  3. * Indicates genes determined from the Partek analysis based on the Affymetrix annotations which were not assigned identities by IPA.