From: Transcriptome assemblies for studying sex-biased gene expression in the guppy, Poecilia reticulata
 | Trinity: Genome-independent assembly (GIA) | Cufflinks: Genome-guided assembly (GGA) |
---|---|---|
Total length (bp) | 416,036,223 | 301,476,740 |
Length with longest isoforms per locus (bp) | 101,831,430 | 128,048,246 |
No. of transfrags | 213,088 | 91,126 |
No. of transcripts (Unique components/gene groups) | 105,664 | 49,971 |
Mean length (bp) | 1,952 | 3,308 |
Longest contig (bp) | 65,264 | 61,058 |
Overall mapping (%) | 73.21 | 73.64 |
Concordant and unique mapping (%) | 62.98 | 55.10 |
Total no. of ORFs | 53,537 | 63,520 |
No. of complete ORFs | 29,309 | 49,535 |
Mean length ORF (bp) | 766 | 803 |
Longest ORF (bp) | 63,897 | 54,732 |
Total length of assembly with CDSs only (bp) | 40,889,623 | 48,745,723 |
Annotations | ||
Against guppy (GGA against GIA or vice-versa) | 40,973 (24,020) | 35,147 (24,020) |
Xiphophorus maculatus | 19,680 (13,399) | 19,941 (14,934) |
Oryzias latipes | 17,925 (11,102) | 18,197 (12,455) |
Gasterosteus aculeatus | 19,139 (11,758) | 19,429 (13,096) |
Orthologs in only one assembly | 4,767 | 6,954 |