Skip to main content

Table 1 Summary of the most common InterPro entries found in the S. lycopersicum stem trichome transcriptome

From: RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters

InterPro

Frequency

Description

IPR011009

571

Protein kinase-like domain

IPR000719

521

Protein kinase, catalytic domain

IPR002290

336

Serine/threonine-/dual-specificity protein kinase, catalytic domain

IPR008271

286

Serine/threonine-protein kinase, active site

IPR020635

283

Tyrosine-protein kinase, catalytic domain

IPR016040

263

NAD(P)-binding domain

IPR013083

239

Zinc finger, RING/FYVE/PHD-type

IPR017441

187

Protein kinase, ATP binding site

IPR002885

181

Pentatricopeptide repeat

IPR015943

175

WD40/YVTN repeat-like-containing domain

IPR001841

172

Zinc finger, RING-type

IPR012677

172

Nucleotide-binding, alpha-beta plait

IPR016024

166

Armadillo-type fold

IPR001245

164

Serine-threonine/tyrosine-protein kinase catalytic domain

IPR000504

158

RNA recognition motif domain

IPR001680

153

WD40 repeat

IPR011046

152

WD40 repeat-like-containing domain

IPR011990

147

Tetratricopeptide-like helical

IPR011989

145

Armadillo-like helical

IPR001128

141

Cytochrome P450

IPR017986

133

WD40-repeat-containing domain

IPR017853

130

Glycoside hydrolase, superfamily

IPR012287

119

Homeodomain-related

IPR001611

115

Leucine-rich repeat

IPR009057

115

Homeodomain-like

IPR016196

112

Major facilitator superfamily domain, general substrate transporter

IPR012336

108

Thioredoxin-like fold

IPR013781

107

Glycoside hydrolase, subgroup, catalytic domain

IPR002213

102

UDP-glucuronosyl/UDP-glucosyltransferase

IPR002401

95

Cytochrome P450, E-class, group I