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Table 3 Numbers of transcripts detected in all comparisons, numbers of differentially expressed transcripts and their proportions

From: In absence of local adaptation, plasticity and spatially varying selection rule: a view from genomic reaction norms in a panmictic species (Anguilla rostrata)

Comparisons

All detected transcripts

All differentially expressed transcripts (% of all detected transcripts)

Overexpressed transcripts

Between origins

 

(p < 0.05)

(FDR 5%)

(FDR 10%)

MR

GRB

T0

2179

883 (41%)

898 (41%)

1144 (53%)

504 (57%)

379 (43%)

BW

1633

259 (16%)

18 (1%)

75 (5%)

116 (45%)

143 (55%)

FW

2094

422 (20%)

140 (7%)

249 (12%)

194 (46%)

228 (54%)

Between environments

    

BW

FW

MR

1400

453 (32%)

341 (24%)

469 (34%)

226 (50%)

227 (50%)

GRB

1794

501 (28%)

326 (18%)

581 (32%)

263 (53%)

238 (47%)

  1. Legend: T0 is the comparison between glass eels captured at the river mouth prior to the beginning of the rearing experiment. GRB is for glass eels and elvers captured at the Grande-Rivière-Blanche river mouth and MR from Mira River. Glass eel were then reared in brackish water (BW) or fresh water (FW). All detected transcripts are the cDNA spots from the printed 6144 on the microarrays slide. Numbers of genes under the p-value are those for which their signal is significantly different between groups in the comparisons and the proportion over all detected transcripts (%). Numbers of genes under the FDR are the ones predicted to be false positives and the proportion over all detected transcripts (%). The numbers of genes in the ‘’Overexpressed transcripts” are those which were over-represented in a group compared to the other and their proportion (%) over the total (p < 0.05).