From: De novo sequencing and comparative analysis of holy and sweet basil transcriptomes
MEP pathway genes | E.C. No. | Ocimum sanctum | Ocimum basilicum | ||
---|---|---|---|---|---|
No. of transcripts | Avg RPKM | No. of transcripts | Avg RPKM | ||
1-Deoxy-D-xylulose 5-phosphate synthase (DXS) | 2.2.1.7 | 24 | 15.74 | 45 | 15.22 |
1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) | 1.1.1.267 | 11 | 15.69 | 4 | 50.58 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (MCT) | 2.7.7.60 | 3 | 28.13 | 7 | 7.28 |
4-Diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) | 2.7.1.148 | 5 | 7.73 | 9 | 2.66 |
4-Hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS) | 1.17.7.1 | 2 | 112.54 | 4 | 40.57 |
Isopentenyl pyrophosphate isomerase (IDI) | 5.3.3.2 | 4 | 24.58 | 18 | 7.18 |
Geranyl diphosphate synthase (GPPS) | 2.5.1.1 | 15 | 7.19 | 21 | 6.05 |
Geranylgeranyl diphosphate synthase (GGPPS) | 2.5.1.29 | 8 | 6.17 | 7 | 5.67 |
Beta-myrcene synthase (MYS) | 4.2.3.15 | 7 | 6.66 | 4 | 7.09 |
Limonene synthase (LS) | 4.2.3.16 | 12 | 3.00 | 5 | 13.28 |
Cineole synthase (CinS2) | 4.2.3.108 | 4 | 8.80 | 1 | 12.20 |
R-linalool synthase (LIS) | 4.2.3.26 | 9 | 15.11 | 14 | 4.37 |
(−)-Endo-fenchol synthase (FES) | 4.2.3.10 | 1 | 0.00 | 7 | 2.91 |
Geraniol synthase (GES) | 3.1.7.11 | 18 | 5.28 | 10 | 32.11 |
Lavandulyl diphsophate synthase (LPPS) | 2.5.1.69 | 14 | 13.14 | 10 | 58.58 |
Exo-alpha-bergamotene synthase (BGS) | 4.2.3.81 | 3 | 10.29 | 1 | 2.23 |
Alpha-zingiberene synthase (ZIS) | 4.2.3.65 | 2 | 3.82 | 9 | 12.43 |
Gamma-cadinene synthase (CDS) | 4.2.3.92 | 8 | 34.92 | 17 | 3.74 |
Germacrene-D synthase (GDS) | 4.2.3.22 | 0 | 0.00 | 13 | 1.34 |
Bicyclogermacrene synthase (Ov-TPS4) | 4.2.3.100 | 4 | 1.87 | 1 | 0.91 |
Selinene synthase (SES) | 4.2.3.86 | 6 | 1.68 | 15 | 7.53 |
Kaurene synthase (KS) | 4.2.3.19 | 5 | 1.49 | 20 | 1.63 |
Copalyl diphosphate synthase (CPS) | 5.5.1.12 | 1 | 0.75 | 6 | 1.66 |
Monoterpene synthase (MTPS) | 4.2.3.- | 0 | 0.00 | 1 | 0.84 |
Sesquiterpene synthase (SesqTPS) | 4.2.3.- | 4 | 1.43 | 4 | 12.81 |
Terpene synthase (TPS) | 4.2.3.- | 2 | 13.13 | 13 | 6.83 |
(+)-Bornyl diphosphate synthase (BPPS) | 5.5.1.8 | 1 | 0.00 | 0 | 10.74 |