Skip to main content

Table 4 Transcript abundance of MEP pathway derived terpene biosynthetic pathway genes as per the lamiaceae annotation

From: De novo sequencing and comparative analysis of holy and sweet basil transcriptomes

MEP pathway genes

E.C. No.

Ocimum sanctum

Ocimum basilicum

No. of transcripts

Avg RPKM

No. of transcripts

Avg RPKM

1-Deoxy-D-xylulose 5-phosphate synthase (DXS)

2.2.1.7

24

15.74

45

15.22

1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR)

1.1.1.267

11

15.69

4

50.58

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (MCT)

2.7.7.60

3

28.13

7

7.28

4-Diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)

2.7.1.148

5

7.73

9

2.66

4-Hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS)

1.17.7.1

2

112.54

4

40.57

Isopentenyl pyrophosphate isomerase (IDI)

5.3.3.2

4

24.58

18

7.18

Geranyl diphosphate synthase (GPPS)

2.5.1.1

15

7.19

21

6.05

Geranylgeranyl diphosphate synthase (GGPPS)

2.5.1.29

8

6.17

7

5.67

Beta-myrcene synthase (MYS)

4.2.3.15

7

6.66

4

7.09

Limonene synthase (LS)

4.2.3.16

12

3.00

5

13.28

Cineole synthase (CinS2)

4.2.3.108

4

8.80

1

12.20

R-linalool synthase (LIS)

4.2.3.26

9

15.11

14

4.37

(−)-Endo-fenchol synthase (FES)

4.2.3.10

1

0.00

7

2.91

Geraniol synthase (GES)

3.1.7.11

18

5.28

10

32.11

Lavandulyl diphsophate synthase (LPPS)

2.5.1.69

14

13.14

10

58.58

Exo-alpha-bergamotene synthase (BGS)

4.2.3.81

3

10.29

1

2.23

Alpha-zingiberene synthase (ZIS)

4.2.3.65

2

3.82

9

12.43

Gamma-cadinene synthase (CDS)

4.2.3.92

8

34.92

17

3.74

Germacrene-D synthase (GDS)

4.2.3.22

0

0.00

13

1.34

Bicyclogermacrene synthase (Ov-TPS4)

4.2.3.100

4

1.87

1

0.91

Selinene synthase (SES)

4.2.3.86

6

1.68

15

7.53

Kaurene synthase (KS)

4.2.3.19

5

1.49

20

1.63

Copalyl diphosphate synthase (CPS)

5.5.1.12

1

0.75

6

1.66

Monoterpene synthase (MTPS)

4.2.3.-

0

0.00

1

0.84

Sesquiterpene synthase (SesqTPS)

4.2.3.-

4

1.43

4

12.81

Terpene synthase (TPS)

4.2.3.-

2

13.13

13

6.83

(+)-Bornyl diphosphate synthase (BPPS)

5.5.1.8

1

0.00

0

10.74