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Table 2 SNP call accuracy and SNP call rate of NF54 purified DNA

From: A microarray platform and novel SNP calling algorithm to evaluate Plasmodium falciparum field samples of low DNA quantity

ID

Parasite DNA (ng)

Call accuracy

Call rate

NF54-1

219

99.4%

86.6%

NF54-2

212

99.5%

81.5%

NF54-3

210

99.4%

78.6%

NF54-4

203

99.4%

73.8%

NF54-5

170

99.4%

85.7%

NF54-6

168

99.4%

77.3%

NF54-7

156

99.2%

76.9%

NF54-8

152

99.3%

69.0%

NF54 (WGA)

222

99.6%

91.6%

NF54 (WGA)

138

99.5%

85.1%

  1. NF54 reference strain DNA was typed at varying concentrations and call accuracy and call rate was calculated. Two samples underwent whole genome amplification (WGA) prior to genotyping and the concentration reflects post-WGA quantities.