Gene | Protein | Direct regulation | Method to study direct regulation | Induction/Reduction | Reference |
---|---|---|---|---|---|
ABCB1 | ABC multidrug transporter | Yes | EMSA, RGA w/ mutated reporter gene | Up | [9] |
ADAM10 | Disintegrin and metalloproteinase domain-containing protein 1a | Not analyzed | RGA | Up | [25] |
ALEX1 | Armadillo repeat-containing X-linked protein 1 | Not analyzed | RGA, ChIP for CREB; activation mediated by CREB (CRE) und E boxes within the ALEX1 promoter | Up | [26] |
ASCL2 | Achaete-scute homolog 2 | Not analyzed | qRT-PCR | Up | [8] |
AXIN2* | Axin-2 | Not analyzed | RGA | Up | |
BAMBI | BMP and activin membrane-bound inhibitor | Yes | RGA w/ mutated reporter gene | [30] | |
BCL2L2 | Bcl-2-like protein 2; BCLW | Yes | ChIP | Up | [31] |
BIRC5* | Survivin, Baculoviral IAP repeat-containing protein 5 | Yes | EMSA, RGA w/ mutated reporter gene | Up | [10] |
BMI1 | Polycomb complex protein BMI-1 | Not analyzed | RGA | Up | [32] |
BMP4* | Bone morphogenetic protein 4 | Not analyzed | Northern blot | Up | [33] |
CCND1* | Cyclin-D1 | Yes | EMSA | Up | |
CD44* | CD44 antigen | Not analyzed | – | Up | |
CDKN2A | p16INK4a | Yes | ChIP | Up | [36] |
CDX1 | Homeobox protein Cdx-1 | Yes | RGA w/ mutated reporter gene | Up | [37] |
CLDN1* | Claudin-1 | Yes | RGA | Up | [38] |
COX2 | cyclooxygenase-2 | Yes | EMSA, RGA w/ mutated reporter gene | Up | [39] |
DKK1* | Dickkopf-1 | Yes | EMSA | Up | [40] |
DKK4* | Dickkopf-4 | Not analyzed | RGA, siRNA/qRT-PCR | Up | |
DNMT1 | DNA methyltransferase 1 | Not analyzed | RGA | Up | [43] |
EDN1* | endothelin-1 | Yes | ChIP | Up | [44] |
EFNB1* | Ephrin-B1 | Not analyzed | Northern blot | Down | [45] |
ENC1 | ectodermal-neural cortex 1 | Yes | RGA w/ mutated reporter gene | Up | [13] |
EPHB2 | Ephrin type-B receptors | Not analyzed | Northern blot | Up | [45] |
EPHB3 | Ephrin type-B receptors | Not analyzed | Northern blot | Up | [45] |
FGF18* | Fibroblast growth factor 18 | Yes | EMSA | Up | |
FGFBP | Fibroblast growth factor-binding protein | Yes | RGA w/ mutated reporter gene | Up | [47] |
FRA1* | Fos-related antigen 1 | Yes | EMSA | Up | [48] |
FSCN1 | Fascin1 | Yes | ChIP | Up | [49] |
GAST* | Gastrin | Not analyzed | RGA | Up | [50] |
HATH1* | human ortholog of atonal1 | Not analyzed | RGA | Down | [19] |
HEF1 (NEDD9) | human enhancer of filamentation 1 | Yes | ChIP | Up | [51] |
HES1 | Hes1 (Hairy and enhancer of split 1) | Yes | RGA w/ mutated reporter gene | Up | [52] |
ID2* | DNA-binding protein inhibitor ID-2 | Yes | EMSA | Up | |
ITF2 (TCF4)* | Immunoglobulin transcription factor 2 | Not analyzed | RGA | Up | [20] |
JAG1* | Jagged-1 | Yes | ChIP | Up | [53] |
JUN* | Transcription factor AP-1 | Yes | EMSA | Up | [48] |
L1CAM* | L1 neuronal cell adhesion molecule | Yes | EMSA | Up | [54] |
LAMC2 | Laminin subunit gamma-2 | Yes | EMSA, RGA w/ mutated reporter gene | Up | [55] |
LEF1* | Lymphoid enhancer-binding factor 1 | Yes | DNAse footprint, ChIP | Up | |
LGR5* | Leucine-rich repeat-containing G-protein coupled receptor 5 | Not analyzed | – | Up | [59] |
MENA | ENAH, Mammalian enabled homologue | Yes | ChIP | Up | [60] |
MET* | Hepatocyte growth factor receptor | Not analyzed | – | Up | [61] |
MMP14 | Matrix metalloproteinase-14 (old name: MT1-MMP) | Yes | EMSA, RGA w/ mutated reporter gene | Up | [16] |
MMP7* | Matrilysin | Not analyzed | RGA | Up | |
MYB | Transcriptional activator Myb | Not analyzed | Northern blot | Up | [62] |
MYC* | Myc proto-oncogene protein | Yes | EMSA | Up | [4] |
MYCBP* | c-myc binding protein | Not analyzed | RGA | Up | [63] |
NOS2* | Nitric Oxide Synthase 2 | Yes | EMSA | Up | [64] |
NOTCH2 | NOTCH2 protein | Yes | EMSA, RGA w/ mutated reporter gene | Up | [65] |
NRCAM* | Neuronal cell adhesion molecule | Not analyzed | RGA | Up | [66] |
PLAU* | urokinase plasminogen activator | Yes | EMSA | Up | [67] |
PLAUR | urokinase-type plasminogen activator receptor | Not analyzed | – | Up | [48] |
PPARD* | PPARdelta | Yes | EMSA | Up | [7] |
S100A4 | Protein S100-A4 | Yes | Chip, EMSA, RGA w/ mutated reporter gene | Up | [68] |
S100A6 | Protein S100-A6 | Not analyzed | RGA | Up | [69] |
SGK1 | Serum/glucocorticoid-regulated kinase 1 | Yes | ChIP | Up | [70] |
SMC3 | Structural maintenance of chromosomes protein 3 | Yes | EMSA, RGA w/ mutated reporter gene | Up | [71] |
SOX9* | Transcription factor Sox-9 | Not analyzed | Northern blot | Up | [72] |
SP5 | Transcription factor Sp5 | Yes | EMSA | Up | [73] |
SRSF3 (SRp20) | Serine/arginine-rich splicing factor 3 | Not | RGA | Up | [74] |
SUZ12 | Polycomb protein SUZ12 | Yes | ChIP, EMSA | Up | [75] |
TCF1* | Transcription factor 7 | Not analyzed | RGA | Up | [76] |
TIAM1* | TIAM-1 | Not analyzed | Northern blot | Up | [77] |
TN-C | Tenascin-C | Yes | ChIP | Up | [78] |
VEGF* | Vascular endothelial growth factor | Not analyzed | RGA | Up | [17] |
YAP | Yes-associated protein | Yes | ChIP | Up | [79] |