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Table 1 Parameters and performance of mark-based and code-based ridge regression models

From: Combinatorial epigenetic patterns as quantitative predictors of chromatin biology

Code-based

 

Mark-based

 

code

beta

mark

beta

code 1

13.48

H2AZ

-1.33

code 2

1.64

H3K27ac

1.28

code 3

-24.98

H3K27me3

-0.33

code 4

12.63

H3K36me3

0.73

code 5

6.55

H3K4me1

-0.17

code 6

32.24

H3K4me2

1.17

code 7

-2.28

H3K4me3

-0.80

  

H3K79me2

-0.63

  

H3K9ac

3.41

  

H4K20me1

0.73

R2

0.85

0.85

 

MSE

0.01

 

0.01

  1. Ridge regression of Pol2 levels in promoters of protein coding genes. beta – regression coefficients; MSE – mean squared error.
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BMC Genomics

ISSN: 1471-2164

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