Table 2 Categorization and abundance of tags
| Â | Â | KR | CR | KS | CS |
|---|---|---|---|---|---|
Raw data | Total | 5786951 | 5890800 | 6035079 | 5775616 |
Distinct tags | 518942 | 628484 | 252376 | 258567 | |
Clean tags | Total number | 5454707 | 5479746 | 5890736 | 5629573 |
Distinct tag numbers | 187698 | 218366 | 110103 | 114495 | |
All tag mapping to gene | Total number | 3814923 | 3717042 | 4938104 | 4600158 |
Total% of clean tags | 69.94% | 67.83% | 83.83% | 81.71% | |
Distinct tag numbers | 75809 | 80554 | 70594 | 72224 | |
Distinct Tag% of clean tags | 40.39% | 36.89% | 64.12% | 63.08% | |
Unambiguous tag mapping to gene | Total number | 2401629 | 2399312 | 2650513 | 2448845 |
Total% of clean tags | 44.03% | 43.79% | 44.99% | 43.50% | |
Distinct tag numbers | 49474 | 53274 | 44370 | 45456 | |
Distinct Tag% of clean tags | 26.36% | 24.40% | 40.30% | 39.70% | |
All tag-mapped genes | Number | 32683 | 33502 | 31136 | 31129 |
% of ref genes | 49.27% | 50.50% | 46.94% | 46.92% | |
Unambiguous tag-mapped genes | Number | 16348 | 16888 | 14858 | 14830 |
% of ref genes | 24.64% | 25.46% | 22.40% | 22.36% | |
Mapping to genome | Total number | 574449 | 555079 | 491620 | 458005 |
Total% of clean tags | 10.53% | 10.13% | 8.35% | 8.14% | |
Unknown tags | Total number | 1065335 | 1207625 | 461012 | 571410 |
Total% of clean tags | 19.53% | 22.04% | 7.83% | 10.15% |