Figure 5

Function prediction of cleavage stage lncRNAs. (A) Stage specific co-expression gene modules and their correlation to development stage. Numbers of each square represent correlation of module and development stage, and p-value of each correlation value. Color of each square is correspond to correlation: Positive correlation (Red); Negative correlation (Green); No correlation (White). The column "Time" in the right represents the correlation of each module and entire development process of cleavage stage. Modules with high correlation to time mean overall upregulated during cleavage stage. (B) Heatmap in the upper panel is the expression pattern of all genes in this module across all 24 samples. The barplot in the middle panel shows the corresponding module eigengene expression vaule versus each sample. The piechart in the lower panel is the ratio of mRNAs and lncRNAs in module. Number beside the pie chart is the exact number of mRNAs and lncRNAs in this module. (C) Function enriched in stage associated modules. Length of bars indicate the significance (-log10 transferred Benjamini-Hochberg adjusted p-value).