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Table 1 STR results from Trioxys pallidus

From: iMSAT: a novel approach to the development of microsatellite loci using barcoded Illumina libraries

 

A) Phobos

B) MSATCOMMANDER

C) iMSAT

repeats

di

tri

tetra

penta

di

tri

tetra

penta

di

tri

tetra

penta

5

4132

1612

262

38

5338

3496

657

44

772

500

93

18

6

3737

3317

683

38

2090

1898

218

4

1718

837

145

8

7

1751

1788

229

6

1243

980

59

2

1181

717

80

1

8

1104

958

64

2

762

417

28

1

765

426

29

1

9

616

379

29

1

411

151

10

0

410

178

9

0

10

355

133

12

0

240

46

9

0

228

72

1

0

11

194

43

8

0

134

19

2

0

177

41

2

0

12

105

20

3

0

60

22

0

0

129

17

1

0

13

52

18

0

0

29

4

0

0

92

5

0

0

14

19

5

1

0

13

10

1

0

64

9

0

0

15

15

9

0

0

15

5

6

0

65

5

0

0

16

7

7

8

0

3

3

2

0

46

1

0

0

17

3

4

0

0

1

4

0

0

51

5

0

0

18

1

3

1

0

5

7

0

0

20

0

0

0

19

5

6

0

0

3

16

0

0

39

0

0

0

20

3

17

0

0

1

34

0

0

36

0

0

0

21+

16

41

0

0

16

7

0

0

124

1

0

0

SUM

12115

8360

1300

85

10363

7119

992

51

5917

2814

360

28

Percent

55.4

38.2

5.9

0.3

55.9

38.4

5.4

0.3

64.9

30.9

3.9

0.3

  1. Results comparing the total numbers of discovered repeats for each pattern type (di, tri, tetra, or penta) using Phobos, MSATCOMMANDER, and iMSAT. The total numbers of repeats for each pattern are summed, and presented as a percentage of total repeats found using each software program.