Type | Genomic features |
---|---|
Chromatin | ENCODE open chromatin, histone modifications,protein-DNA binding [8], Roadmap EpigenomicsDNA methylation [10] |
Genomic states | ChromHMM segmentation [22], supervised genomicregion classification [23] |
Expression | ENCODE RNA-seq [8] |
Sequence | UCSC [24] conservation scores [25, 26], transcriptionfactor binding motifs [27], sequence uniqueness [28],repeats [29], GC content |
Annotation | Gencode [30] |
Variations | dbSNP [31] |
Diseases |