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Table 1 List of genomic features provided by VAS

From: VAS: a convenient web portal for efficient integration of genomic features with millions of genetic variants

Type

Genomic features

Chromatin

ENCODE open chromatin, histone modifications,protein-DNA binding [8], Roadmap EpigenomicsDNA methylation [10]

Genomic states

ChromHMM segmentation [22], supervised genomicregion classification [23]

Expression

ENCODE RNA-seq [8]

Sequence

UCSC [24] conservation scores [25, 26], transcriptionfactor binding motifs [27], sequence uniqueness [28],repeats [29], GC content

Annotation

Gencode [30]

Variations

dbSNP [31]

Diseases

GWAS Catalog [32], The Human Gene MutationDatabase [33]