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Table 3 SNP detection results

From: De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis

 

Clones

# SNPs

Mean SNP Rate

# Transcripts with SNPs

 

Wilson vs SP1

120208

0.0023 (1/442)

25123

20X

Wilson vs SP3

141044

0.0024 (1/421)

28427

 

SP1 vs SP3

110899

0.0022 (1/465)

22794

 

Wilson vs SP1

201063

0.0028 (1/358)

37486

10X

Wilson vs SP3

229374

0.0030 (1/339)

41937

 

SP1 vs SP3

195009

0.0028 (1/364)

36144

  1. The mean SNP rate was calculated based on the sum of nucleotides in transcripts with at least one SNP.