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Table 4 SNPs in putative voltage-gated Na + or Ca 2+ channel sequences

From: De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis

 

Channel ID

# SNPs in transcript

Mean SNP rate

Length transcript

Length ORF

Non-synonymous/synonymous SNPs in ORF

Wilson vs SP1

394

45

0.0065 (1/153)

6893

6686

0.23

12559

30

0.0046 (1/216)

6475

6213

0.39

19932

1

0.0002 (1/6464)

6464

6165

1.00

26784

25

0.0041 (1/241)

6034

5862

0.27

30595

23

0.0032 (1/316)

7274

5532

—

36263

20

0.0025 (1/401)

8014

7908

0.26

64946

6

0.0013 (1/755)

4532

4401

0.80

Wilson vs SP3

394

44

0.0064 (1/157)

6893

6686

0.29

 

12559

35

0.0054 (1/185)

6475

6213

0.25

19932

0

0

6464

6165

—

26784

27

0.0045 (1/223)

6034

5862

0.23

30595

24

0.0033 (1/303)

7274

5532

0.00

36263

19

0.0024 (1/422)

8014

7908

0.20

64946

19

0.0042 (1/239)

4532

4401

0.19

SP1 vs SP3

394

39

0.0057 (1/177)

6893

6686

0.13

 

12559

17

0.0026 (1/381)

6475

6213

0.29

19932

1

0.0002 (1/6464)

6464

6165

1.00

26784

22

0.0036 (1/274)

6034

5862

0.19

30595

5

0.0007 (1/1455)

7274

5532

—

36263

13

0.0016 (1/616)

8014

7908

0.18

64946

21

0.0046 (1/216)

4532

4401

0.44