Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens

Table 3 Transposable element content in genomes of isolates of the Leptosphaeria maculans-Leptosphaeria biglobosa species complex

		L. maculans‘brassicae’		L. maculans‘lepidii’		L. biglobosa‘brassicae’		L. biglobosa‘canadensis’		L. biglobosa‘thlaspii’
TE class	TE order	Bases covered	% of repetitive fraction	Bases covered	% of repetitive fraction	Bases covered	% of repetitive fraction	Bases covered	% of repetitive fraction	Bases covered	% of repetitive fraction
Class I	Ty1-Copia LTR	3372500	22.1	77794	7.6	166805	14.9	34236	3.8	141432	10.0
	Ty3-Gypsy LTR	8749750	57.4	426573	41.7	368819	32.9	399244	44.4	365617	25.7
	LINE	6996	0.0	6523	0.6	15680	1.4	4535	0.5	54520	3.8
	Misc.	586134	3.8	1552	0.2	0	0.0	0	0.0	0	0.0
	Sub-total:	12715380	83.3	512442	50.1	551304	49.2	438015	48.7	561569	39.5
Class II	Tc1-Mariner	36075	0.2	193492	18.9	157676	14.1	76864	8.5	136579	9.6
	hAT	79154	0.5	1845	0.2	71796	6.4	21781	2.4	16950	1.2
	Mutator	890076	5.8	22524	2.2	42470	3.8	1344	0.1	3957	0.3
	MITE	0	0.0	11065	1.1	462	0.0	0	0.0	0	0.0
	Misc.	336819	2.2	19579	1.9	81576	7.3	30251	3.4	8034	0.6
	Sub-total:	1342124	8.8	248505	24.3	353980	31.6	130240	14.5	165520	11.6
Non-categorized	Non-categorized	1199008	7.9	262241	25.6	215260	19.2	331133	36.8	694332	48.8
	Total:	15256512		1023188		1120544		899388		1421421

ISSN: 1471-2164