BMC Genomics

Table 3 Genotype/phenotype associations and known QTL location

From: Linkage disequilibrium and genome-wide association analysis for anthocyanin pigmentation and fruit color in eggplant

	GWA mapping		Family-based QTL mapping
Chromosome	Association Group	Trait	QTL	Reference
E01	E01.1	*adlan*	-	-
	E01.2	stean	-	-
		fcol	fai1.1	Doganlar et al. [6]
			fap	Ge et al. [16]
E02	E02.1	adlan	lla2.2	Doganlar et al. [6]
		stean	steanE02.MT	Barchi et al. [10]
		calan	-	-
		adlvean	-	-
E03	E03.1	*fglo*	-	-
E05	E05.1	stean	steanE05.ML; steanE05.MT	Barchi et al. [10]
		adlvean	lveanE05.ML; lveanE05. MT	Barchi et al. [10]
		pedan	pedanE05.ML; pedanE05.MT	Barchi et al. [10]
		fcol	fap	Ge et al. [16]
E06	E06.1	adlan	ablanE06.ML	Barchi et al. [10]
			lla6.1	Doganlar et al. [6]
E07	E07.1	*fcol*	-	-
E08	E08.1	stean	-	-
E10	E10.1	calan	-	-
	E10.2	adlan	ablanE10a.ML; ablanE10a.MT	Barchi et al. [10]
			lla10.1	Doganlar et al. [6]
		stean	steanE10.ML; steanE10.ML	Barchi et al. [10]
			sa10.1	Doganlar et al. [6]
		calan	calanE10.ML; calanE10.MT	Barchi et al. [10]
		adlvean	lveanE10.ML; lveanE10.MT	Barchi et al. [10]
		ablvean	lveanE10.ML; lveanE10.MT	Barchi et al. [10]
		pedan	-	-
		fcol	fap10.1; fai10.1; fc10.1	Doganlar et al. [6]
	E10.3	*stean*	-	-
		*adlvean*	-	-
		*ablvean*	-	-
		*pedan*	-	-
		*fcol*	-	-
		*fglo*	-	-
E11	E11.1	adlan	ablanE11.ML	Barchi et al. [10]
E11		adlvean	-	-
E11		fcol	-	-

The four locations where no QTL related to anthocyanin content or fruit color have been located are shown in bold.

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