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Table 1 Correlation coefficients between simulated data set annotations and known protein domain content

From: Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation

 

454

Illumina

 

LD

MD

HD

LD

MD

HD

ALL

0.591

0.605

0.576

0.717

0.734

0.703

CLUSTERED

0.589

0.601

0.573

0.709

0.728

0.698

CONTIGS

0.579

0.595

0.512

0.772

0.817

0.735

DEBRIS

0.551

0.554

0.578

0.688

0.702

0.692

ASSEMBLY 1

0.610

0.621

0.579

0.842

0.868

0.812

CLUSTERED ASSEMBLY

0.610

0.620

0.578

0.843

0.869

0.815

  1. Summary of Pearson correlation coefficients between processed data sets and the known domain content of sample for low diversity (LD), medium diversity (MD) and high diversity (HD) simulated 454 and Illumina metatranscriptomes. 1Assembly includes annotation from both contigs and debris sequences.
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BMC Genomics

ISSN: 1471-2164

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