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Table 2 Genes with stage-regulated expression controlled primarily by TE a

From: Extensive stage-regulation of translation revealed by ribosome profiling of Trypanosoma brucei

GeneID

Product

Log2TE slBF-PCFb

Log2TE cBF-PCF

Tb927.1.1580

cytochrome c oxidase assembly factor SCO1/2

−2.92

−2.10

Tb927.1.1820

PIN nuclease domain protein

2.43

2.12

Tb927.1.3130

protein kinase

2.38

3.46

NTCDS.Tb3.NT.15

hypothetical protein

2.62

2.61

Tb927.4.2290

glucose transporter

1.95

2.22

Tb927.4.5190

hypothetical protein, conserved

−3.11

−3.54

Tb927.5.285b

receptor-type adenylate cyclase ESAG4

−2.24

−2.26

Tb927.5.320

receptor-type adenylate cyclase GRESAG4

−2.00

−2.16

Tb927.5.430

ISG65/75 domain protein

2.47

1.69

Tb927.7.1840

zinc finger protein

2.70

1.97

Tb927.7.1880

zinc finger protein

2.82

1.99

Tb927.7.6150

hypothetical protein, conserved

3.65

3.52

Tb927.8.2480

3-oxo-5-alpha-steroid 4-dehydrogenase-like

2.97

2.69

Tb927.8.2780

RNA-binding protein RBP10

4.75

7.35

Tb927.8.4570

RING domain protein

2.39

1.88

Tb927.8.5480

hypothetical protein, conserved

2.10

2.19

Tb927.8.6130

hypothetical protein, conserved

2.63

1.95

Tb927.8.7500

hypothetical protein, conserved

2.18

2.45

Tb927.9.1500

protein kinase

1.58

3.52

Tb927.9.3100

hypothetical protein, conserved

2.09

2.57

Tb927.9.3820

syntaxin

1.88

2.03

Tb927.9.15850

hypothetical protein

3.67

3.30

NTCDS.Tb9.NT.51

hypothetical protein

2.53

2.49

Tb927.10.2210

ubiquitin carboxyl-terminal hydrolase

−2.90

−3.07

Tb927.10.12500

P-type H -ATPase

−2.08

−2.29

Tb927.10.14910

sarcoplasmic reticulum sarcalumenin

1.63

2.11

Tb927.11.1340

Protein kinase-like domain protein

−3.96

−2.71

Tb927.11.3630

nucleobase/nucleoside transporter 8.1

4.28

2.16

Tb927.11.7820

endonuclease/exonuclease/phosphatase

1.94

3.12

Tb927.11.12730

hypothetical protein

3.00

2.73

Tb927.11.14740

Recombinase-like domain protein

1.70

2.08

Tb927.11.15840

L-Lysine transport protein

1.09

2.11

Tb927.11.15860

L-Lysine transport protein

1.14

2.05

  1. aGLM and edgeR both indicate TE plays a significant role and that mRNA change is not significant.
  2. bPositive values indicate higher TE in BF, negative indicate higher TE in PCF.