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Table 3 The presence of uORFs and TE

From: Extensive stage-regulation of translation revealed by ribosome profiling of Trypanosoma brucei

 

PCF

slBF

cBF

Alla

uORF b

no uORF

uORF

no uORF

uORF

no uORF

Observations

322

7009

322

7009

322

7009

TE

      

Mean

0.3756

0.8434

0.3092

0.8031

0.3647

0.8678

Pc

1.9e-49

7.5e-65

2.7e-54

mRNA

      

Mean

522.4

1013.5

599.4

878.3

555.8

891

P

1.9e-07

1.2e-07

7.6e-06

mRNA (q2 + q3) d

uORF

no uORF

uORF

no uORF

uORF

no uORF

Observations

186

3476

161

3529

181

3512

TE

      

Mean

0.3544

0.7239

0.3007

0.7648

0.3308

0.6912

P

1.7e-28

7.9e-36

1.4e-29

mRNA

      

Mean

552.8

558.2

568.4

571.9

584.7

570.5

P

0.6514

0.8048

0.1144

  1. aExcluding pseudogenes and genes with unknown 5′ UTRs.
  2. bThose genes with uORF RRSs > 2.
  3. cMann Whitney U calculation.
  4. dThe genes were further restricted to those with mRNA levels in quartiles 2 and 3 for the biological condition analyzed (PCF 323-857, slBF 334-902; cBF 350-851 median mRNA read counts).
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BMC Genomics

ISSN: 1471-2164

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