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Table 1 Read statistics of 8 SMRT sequencing runs pre and post correction

From: The genomic landscape of the verrucomicrobial methanotroph Methylacidiphilum fumariolicum SolV

 

PacBio RS (raw)

PacBio RS (corrected)*

Number of reads

234,459

48,452

Total nucleotides

352,940,647

90,484,833

Median read length

1,263 bp

1,742 bp

5th percentile

396 bp

699 bp

95th percentile

3,374 bp

3,311 bp

Maximum length

22,910 bp

15,852 bp

GC content

43.54%

41.70%

Coverage depth

141.74×

36.34×

  1. *Error-corrected PacBio reads generated by HGAP with seed length of 1,500 bp.
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BMC Genomics

ISSN: 1471-2164

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