Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida

BMC Genomics

Table 1 Genes potentially encoding cell wall modifying proteins in various nematode species

Species/trophic life style	GH5	GH45	GH30	GH43	GH28	GH53	PL3	CBM	Expansin	Total
*Globodera pallida*	15	0	0	1	0	2	7	6	9	40
Sedentary endoparasitic PPN	15	0	0	1	0	2	7	6	9	40
*Meloidogyne incognita*	21	0	6	2	2	0	30	9	20	90
Sedentary endoparasitic PPN	21	0	6	2	2	0	30	9	20	90
*Meloidogyne hapla*	6	0	1	2	2	0	22	2	6	41
Sedentary endoparasitic PPN	6	0	1	2	2	0	22	2	6	41
*Bursaphelenchus xylophilus*	0	11	0	0	0	0	15	0	8	34
Fungal feeder/facultative migratory endoparasite of trees	0	11	0	0	0	0	15	0	8	34
*Caenorhabditis elegans*	0	0	0	0	0	0	0	0	0	0
Free-living bacterial feeder	0	0	0	0	0	0	0	0	0	0
*Pristionchus pacificus*	6	0	0	0	0	0	0	0	0	6
Free-living bacterial feeder	6	0	0	0	0	0	0	0	0	6
*Brugia malayi*	0	0	0	0	0	0	0	0	0	0
Animal parasite	0	0	0	0	0	0	0	0	0	0

GH, Glycosyl hydrolase family; CBM, Carbohydrate binding module; PL, Pectate Lyase; PPN, plant-parasitic nematode.

ISSN: 1471-2164