| Solemya velum endosymbiont | Riftia pachyptila endosymbiont* | Calyptogena magnifica endosymbiont | Calyptogena okutanii endosymbiont | Buchnera aphidicola APS | Ca.Carsonella ruddii PV | Thiomicrospira crunogena XCL-2 | Allochromatium vinosum DSM 180 | Escherichia coli K12 DH1, ATCC 33849 |
---|---|---|---|---|---|---|---|---|---|
Size, mb | 2.70 | 3.20 | 1.20 | 1.02 | 0.65 | 0.16 | 2.40 | 3.60 | 4.63 |
G + C% | 51.0 | 57.9 | 34.0 | 31.6 | 26.4 | 16.6 | 43.1 | 64.3 | 50.8 |
ORFs | 2757 | 4182 | 1118 | 981 | 615 | 213 | 2263 | 3317 | 4273 |
Average ORF length, bp | 885 | 354 | 874 | 897 | 935 | 737 | 974 | 1005 | 940 |
Percent coding | 90.7 | 69.8 | 79.8 | 85.9 | 87.6 | 97.3 | 90.5 | 90.6 | 86.6 |
rRNA operons (16S-23S-5S) | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 3 | 7 |
tRNA genes | 38 | 32 | 36 | 36 | 32 | 28 | 43 | 51 | 88 |
Proteins with predicted function | 1988 | 2218 | 932 | 838 | 561 | 113 | 1785 | 2505 | 3506 |
Hypothetical and uncharacterized conserved proteins | 769 | 3693 | 175 | 253 | 106 | 46 | 689 | 924 | 833 |
ORFs in paralogous families | 382 | 292 | 27 | 19 | 7 | 0 | 159 | 413 | 794 |
Pseudogenes | 0 | 0 | 100 | 2 | 1 | 0 | 8 | 81 | 178 |
Sigma factors | 9 | 4 | 2 | 2 | 2 | 0 | 6 | 6 | 7 |
Mobile elements | 78 | 10 | 0 | 0 | 0 | 0 | 10 | 19 | 39 |
 | Symbiont | Symbiont | Symbiont | Symbiont | Symbiont | Symbiont | Free-living | Free-living | Free-living |