Table 1 RNA sequencing results
Strain | AltDE | AltDE1 | ||||||
|---|---|---|---|---|---|---|---|---|
Growth Conditions | RMa-13°C | RMa-25°C | MMGb-25°C | STRc-25°C | RMa-13°C | RMa-25°C | MMGb-25°C | STRc-25°C |
Total number of reads | 3,444,176 | 11,503,336 | 8,986,648 | 2,995,620 | 6,230,679 | 7,840,241 | 13,514,524 | 14,695,977 |
Reads mapped to ribosomal operons | 3,206,468 | 10,852,030 | 8,764,784 | 2,940,326 | 5,812,308 | 7,342,658 | 13,314,002 | 14,668,090 |
Percentage of reads mapped to ribosomal operons | 93.1 | 94.3 | 97.5 | 98.2 | 93.2 | 93.7 | 98.5 | 99.8 |
Chromosome length (nt) | 4,480,937 | 4,643,844 | ||||||
Average coverage per nucleotided | 8.7X | 14.8X | 5.0X | 1.2X | 8.9X | 10.5X | 4.1X | 0.6X |
Percentage of CDS expressed | 76.9 | 90.3 | 86.5 | 86.2 | 82.7 | 88.8 | 87.6 | 43.7 |
Reads mapped in the chromosome | 387,708 | 661,306 | 221,864 | 55,294 | 412,700 | 487,487 | 191,820 | 27,243 |
Reads mapped to CDS | 258,240 | 454,504 | 160,098 | 40,566 | 275,125 | 325,206 | 139,930 | 21,824 |
Percentage of reads mapped to IR | 33.4 | 30.2 | 27.8 | 26.6 | 33.3 | 33.3 | 27.1 | 19.8 |
Percentage of reads mapped to ribosomal proteinse | 21 | 22.9 | 11.2 | 6 | 20.9 | 20.1 | 4 | 1.2 |
Plasmid length (nt) | -- | -- | -- | -- | 303,282 | |||
Average coverage per nucleotide | -- | -- | -- | -- | 1.9X | 3.3X | 2.9X | 0.2X |
Reads mapped to plasmid | -- | -- | -- | -- | 5,671 | 10,096 | 8,702 | 644 |