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Table 1 Transcriptome sequence information

From: Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts

Species

Sample

Raw reads (#)

Trimmed reads (#)

Mapped reads (#)

Depth

Reference coverage (%)

G. barbadense

3-79

101,276,621

101,276,621

43,519,596

48.45

84%

G. tomentosum

19909036.05

63,119,599

63,118,203

38,439,408

31.77

87%

G. mustelinum

200508123.02

65,940,564

65,940,111

40,767,777

33.07

86%

G. armourianum

D2-1-6

53,279,426

53,279,087

20,266,019

20.90

68%

G. longicalyx

200908137.04

52,050,537

52,050,305

23,393,277

24.50

65%

  1. Raw and processed read information of Illumina GA-II (Solexa) sequence generated from RNA-Seq libraries for G. barbadense, G. tomentosum, G. mustelinum, G. armourianum, and G. longicalyx.