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Table 1 Summary of the Turkish genome project

From: Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa

Sample ID

Coverage

SNPs

Novel SNPs

Indels1

Novel indels

Deletions2

Novel deletions3

06A010111

36.45

3,238,983

40,780

915,917

223,334

1,939

245

08P210611

36.58

3,258,882

45,582

904,093

216,377

1,690

176

24D220611

39.68

3,274,222

46,468

912,202

219,227

1,711

202

25A220611

33.37

3,241,675

46,364

905,503

217,648

1,676

188

31P140611

36.72

3,238,064

47,316

903,106

217,024

1,718

198

32A140611

33.56

3,268,102

42,525

907,291

217,036

1,726

192

33M140611

32.41

3,255,966

43,745

902,853

214,684

1,743

197

34S291210

37.66

3,251,620

42,144

914,379

221,851

1,881

223

35C240511

34.42

3,241,914

39,450

910,516

219,466

1,735

184

38I220611

35.44

3,231,738

46,475

902,232

216,872

1,681

183

42S291210

31.33

3,254,639

44,041

887,958

208,584

1,669

168

48S210611

38.17

3,302,283

43,599

914,063

218,293

1,700

178

50G301210

37.80

3,276,506

43,416

920,203

223,146

1,930

249

52C130611

32.63

3,269,131

44,621

916,643

219,997

1,888

240

57M220611

31.60

3,213,229

42,705

891,337

212,644

1,654

182

65A220611

48.09

3,259,571

48,211

915,187

222,548

1,676

184

Non redundant Total

 

8,161,894

647,131

1,729,238

526,177

3,292

494

  1. 1Indels between 1–50 bp. 2Deletions >50 bp. 3Deletions that are not previously reported in the 1000 Genomes Project (both 2010 and 2012 releases).