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Table 1 Architecture for each program compared in our study

From: MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence

Program

Architecture

MaxSSmap

GPU

MaxSSmap_fast

GPU

CUDA-SW++

GPU

SSW

SIMD single CPU (GPU unavailable)

NextGenMap

GPU

BWA-MEM

Multi-threaded 12 CPUs