Table 6 Comparison of meta-methods to NextGenMap and BWA
(a) Percent of one million 250 bp reads mapped correctly to the human chromosome one genome. Shown in parenthesis are incorrectly mapped reads and remaining are rejected | |||
|---|---|---|---|
Div | BWA | NextGenMap | NextGenMap+MaxSSmap_fast |
Reads without gaps | |||
.1 | 96(3) | 99 (1) | 99 (1) |
.2 | 33 (6) | 86 (6) | 94 (6.2) |
.3 | 0.8 (6) | 37 (9) | 88 (10.5) |
Reads with gaps | |||
.1 | 89 (3) | 96 (2) | 98 (2) |
.2 | 28 (5) | 79 (6) | 92 (6.5) |
.3 | 0.7 (0.5) | 30 (7) | 80 (9.4) |
(b) Time in minutes to map one million 250 bp reads to the human chromosome one genome | |||
Div | BWA | NextGenMap | NextGenMap+MaxSSmap_fast |
Reads without gaps | |||
.1 | 1.6 | 7.1 | 10.3 |
.2 | 0.8 | 44 | 626 |
.3 | 0.6 | 65 | 3992 |
Reads with gaps | |||
.1 | 1.5 | 9.8 | 176 |
.2 | 0.7 | 51 | 1126 |
.3 | 0.6 | 66 | 4611 |