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Table 3 Genic fractions of total and covered predicted sites

From: Flexible and scalable genotyping-by-sequencing strategies for population studies

 

MlyI

AluI

RsaI

DraI

EcoRV

StuI

HaeIII

HincII

    

Maize

    

Fraction total predicted genic sites

0.0668

0.0868

0.0957

0.0921

0.1021

0.0921

0.0836

0.1040

Fraction predicted genic sites 100-1000 bp

0.0621

0.0900

0.0982

0.0766

0.0820

0.0542

0.0823

0.0967

Fraction predicted genic sites 100-400 bp

0.0543

0.0908

0.1011

0.0624

0.0940

0.0428

0.0804

0.0953

Fraction genic sites 100-200 bp

0.0538

0.0900

0.1068

0.0560

0.0780

0.0495

0.0804

0.0865

Fraction total covered sites genic*

0.0657

0.1368

0.1531

0.0768

0.1067

0.0669

0.1007

0.2031

Fraction covered sites genic 100-1000 bp*

0.0660

0.1321

0.1488

0.0757

0.1050

0.0646

0.0967

0.1993

Fraction covered sites genic 100-400 bp*

0.0638

0.1317

0.1484

0.0742

0.1093

0.0664

0.0964

0.1958

Fraction covered sites genic 100-200 bp*

0.0630

0.1321

0.1503

0.0661

0.0928

0.0763

0.0961

0.1737

    

Rice

    

Fraction total predicted genic sites

0.3102

0.3342

0.3070

0.2196

0.3917

0.3794

0.2756

0.3561

Fraction predicted genic sites 100-1000 bp

0.2793

0.3367

0.3261

0.1721

0.3124

0.2261

0.2977

0.3021

Fraction predicted genic sites 100-400 bp

0.2471

0.3442

0.3112

0.1439

0.2790

0.2084

0.2910

0.3021

Fraction genic sites 100-200 bp

0.2244

0.3468

0.3041

0.1328

0.3016

0.2417

0.2929

0.2867

Fraction total covered sites genic*

0.2588

0.3871

0.3487

0.1619

0.3321

0.3455

0.3240

0.4336

Fraction covered sites genic 100-1000 bp*

0.2625

0.3837

0.3502

0.1646

0.3334

0.3413

0.3222

0.4178

Fraction covered sites genic 100-400 bp*

0.2587

0.3796

0.3435

0.1504

0.2970

0.2958

0.3180

0.4178

Fraction covered sites genic 100-200 bp*

0.2423

0.3825

0.3366

0.1395

0.3158

0.3019

0.3241

0.4060

  1. *A read alignment with MQ ≥20 is required for a site to be considered “covered”.