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Figure 3 | BMC Genomics

Figure 3

From: Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets

Figure 3

A comparison of FDR curves based on three data sets. A comparison of false discovery rate (FDR) curve based on our proposed method for concordant integrative gene set enrichment analysis with the FDR curves based on the gene set analysis (GSA) for individual data sets. In each plot, the black solid curve represents the results based on our method; the black dashed curve represents the results based on GSA for the Boston data; the black dotted curve represents the results based on GSA for the Michigan data; the black dot-dashed curve represents the results based on GSA for the Stanford data. The gray dotted lines represent three FDR levels: 0.05, 0.1 and 0.2. Both up-regulated (a) and down-regulated (b) differential expression based analysis results are presented.

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