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Table 2 Top 10 frequently selected genes by AucEN.

From: AucPR: An AUC-based approach using penalized regression for disease prediction with high-dimensional omics data

data

gene id

gene symbol

description

Coverage

Colon

Hsa.2097

R14852

Human vasoactive intestinal peptide (vip) mrna, complete cds

AucL, LogL, LogEN, [35]

 

Hsa.3331

T86473

Nucleoside diphosphate kinase a (Human)

AucL [36]

 

Hsa.37937

R87126

Myosin heavy chain, nonmuscle (Gallus gallus)

AucL, LogL, LogEN, Msauc, [3, 4]

 

Hsa.601

J05032

Human aspartyl-tRNA synthetase alpha-2 subunit mRNA, complete cds

AucL, LogEN, [4]

 

Hsa.36952

H43887

Complement factor d precursor (Homo sapiens)

AucL,[37]

 

Hsa.8125

T71025

Human (HUMAN)

AucL, [38]

 

Hsa.8147

M63391

Human desmin gene, complete cds

AucL, LogL, LogEN, Msauc, [3, 4, 39]

 

Hsa.3306

X12671

Human gene for heterogeneous nuclear ribonucleoprotein (hnRNP) core protein A1

LogL, LogEN, [4]

 

Hsa.26673

R76825

RNA-specific gtpase-activating protein (Homo sapiens)

AucL, [40]

 

Hsa.14069

T67077

Sodium/potassium-transporting atpase gamma chain (Ovis aries)

[41]

Leukaemia

X59711 at

NFYA

NFYA Nuclear transcription factor Y, alpha

[42]

 

M30938 at

XRCC5

ATP-DEPENDENT DNA HELICASE II, 86 KD SUBUNIT

[43]

 

U57721 at

Kynu

L-kynurenine hydrolase mRNA

[44]

 

X07834 at

Sod2

SOD2 Superoxide dismutase 2, mitochondrial

[45]

 

U37408 at

Ctbp1

CtBP mRNA

[46]

 

M98539 at

ptgds

Prostaglandin D2 synthase gene

[47]

 

U35113 at

Mta1

Metastasis-associated mta1 mRNA

[48]

 

X13973 at

rnh1

RNH Ribonuclease/angiogenin inhibitor

[49]

 

D49817 at

pfkfb3

Fructose 6-phosphate,2-kinase/fructose 2,6-bisphosphatase

[50]

 

M83233 at

TCF12

TCF12 Transcription factor 12 (HTF4, helix-loop-helix transcription factors 4)

LogL, LogEN, [51]

DLBCL

U96113 at

WWP1

Nedd-4-like ubiquitin-protein ligase WWP1 mRNA, partial cds

AucL, [52]

 

U46006 s at

CSRP2

Smooth muscle LIM protein (h-SmLIM) mRNA

AucL, LogL, LogEN, [53]

 

M35878 at

igfbp3

INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN 3 PRECURSOR

AucL, [54]

 

U77949 at

cdc6

Cdc6-related protein (HsCDC6) mRNA

AucL, [55]

 

L41067 at

Nfatc3

Transcription factor NFATx mRNA

AucL, [56]

 

U95006 at

STRA13

D9 splice variant A mRNA

[57]

 

U64863 at

Pdcd1

HPD-1 (hPD-1) mRNA

AucL, [58]

 

AB002409 at

ccl21

SLC

AucL, MSauc, [28]

 

HG2279-HT2375 at

TPI1

Triosephosphate Isomerase

AucL

 

U17969 at

eif5a

EIF5A Eukaryotic translation initiation factor 5A

[59]

  1. The "Coverage" column shows the genes frequently selected by other methods or reported in the literature.