Figure 4
From: TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads
Performance evaluation with TIGAR2, TIGAR1, RSEM, and Cufflinks using single-end and variable lengths simulation data. Root mean square errors of the predicted transcript isoform abundances with each method against the true gene expression levels are shown for 100 bp, 250 bp, 500 bp, and 1,000 bp single-end, and variable-length simulation data. Because RSEM did not produce predictions for 1,000 bp single-end reads, errors were calculated assuming abundances were estimated as zero for all isoforms.