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Table 1 Computational resources required for the real data analysis

From: TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads

Tool

Implementation

CPU time in alignment (minutes)

CPU time in estimation (minutes)

Memory (GB)

TIGAR2

Java

18

12

8

TIGAR1

Java

18

53

8

RSEM

C++

10

24

2

TopHat-Cufflinks

C++

1,379

5

4

  1. The CPU time and memory required for the real data analysis with TIGAR2, TIGAR1, RSEM, and TopHat-Cufflinks are summarized.
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