Table 4 Accuracy, sensitivity, PPV and F-Score in % for the First 454 dataset and fold change threshold f of 1, 1.5, and 2.
From: Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates
Fold Change | Method | Accuracy % | Sensitivity % | PPV % | F-Score % |
|---|---|---|---|---|---|
FisherTotal | 34.01% | 30.50% | 95.63% | 46.24% | |
FisherHousekeeping | 24.52% | 20.12% | 94.74% | 33.38% | |
1 | GFOLD | 55.62% | 54.18% | 92.11% | 68.23% |
IsoDE-Match | 75.33% | 79.57% | 77.41% | 78.47% | |
IsoDE-All | 78.85% | 84.67% | 81.04% | 82.82% | |
FisherTotal | 48.18% | 35.37% | 89.81% | 50.75% | |
FisherHousekeeping | 42.48% | 24.86% | 97.74% | 39.63% | |
1.5 | GFOLD | 62.19% | 58.13% | 85.39% | 69.17% |
IsoDE-Match | 64.09% | 74.19% | 72.52% | 73.35% | |
IsoDE-All | 72.85% | 79.54% | 80.62% | 80.08% | |
FisherTotal | 57.96% | 39.53% | 85.43% | 54.05% | |
FisherHousekeeping | 55.33% | 29.30% | 97.67% | 45.08% | |
2 | GFOLD | 69.05% | 61.16% | 83.49% | 70.60% |
IsoDE-Match | 67.15% | 76.51% | 70.30% | 73.27% | |
IsoDE-All | 75.18% | 80.93% | 78.03% | 79.45% |