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Table 3 Genome assembly summary

From: Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing

Summary

Number

Estimated genome size (bp)

238,934,385

Total assembly length (bp)

228,315,917

Total assembly gap length (bp)

22,358,847

Number of contigs

18,160

Contig N50 length (bp)

21,729

Number of scaffolds

2,430

Scaffold N50 length (bp)

1,421,626

Largest scaffold length (bp)

6,352,280

Average scaffod length (bp)

93,957

Number of (A + T)s (%)

60.19

Number of (G + C)s (%)

30.02

Number of Ns (%)

9.79

Repeats length (bp)

14,794,603

Interspersed repeats (bp)

4,448,613

Simple repeats (bp)

8,167,274

  1. Size of estimated genome and statistics of assembled scaffolds. The N50 scaffod size indicated that 50% of nucleotides in the assembly occur in scaffolds of length more than or equal to the N50 size.