Skip to main content

Table 1 Comparison of homopolymers between high coverage and low coverage areas across 24 samples.

From: Underlying Data for Sequencing the Mitochondrial Genome with the Massively Parallel Sequencing Platform Ion Torrent PGM

 

High coverage areas1

Low coverage areas2

Homopolymer type

Number of Homopolymers

Number of Homopolymers

AA

276

320

CC 3

275

347

GG

167

81

TT

238

225

AAA

104

95

CCC

76

124

GGG

31

12

TTT

82

42

AAAA

22

33

CCCC

31

54

GGGG

4

2

TTTT

18

12

AAAAA

10

11

CCCCC

8

28

GGGGG

2

0

TTTTT

4

3

AAAAAA

4

6

CCCCCC

1

8

GGGGGG

1

0

TTTTTT

2

1

AAAAAAA

2

2

CCCCCCC

0

1

TTTTTTT

1

0

AAAAAAAA

0

1

  1. 1 Total number of bases in high coverage areas is 6858, and GC content is 44%. 2 Total number of bases in low coverage areas is 6760, and GC content is 47%. 3 For quick reference, cytosine homopolymers are in bold.