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Table 1 19 RNA-seq datasets from SRA

From: IIIDB: a database for isoform-isoform interactions and isoform network modules

ID

SRA ID

# Exp

Title

d1

ERP000546

48

Illumina bodyMap2 transcriptome

d2

SRP005169

41

Widespread splicing changes in human brain development and aging

d3

SRP005408

31

Gene expression profile in postmortem hippocampus using RNAseq for addicted human samples

d4

SRP010280

31

Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins

d5

SRP002628

30

Comparative transcriptomic analysis of prostate cancer and matched normal tissue using RNA-seq

d6

ERP000550

29

Complete transcriptomic landscape of prostate cancer in the Chinese population using RNA-seq

d7

SRP005242

21

A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes: RNA-Seq Comparison

d8

SRP002079

20

GSE20301: Dynamic transcriptomes during neural differentiation of human embryonic stem cells

d9

ERP000992

18

The effect of estrogen and progesterone and their antagonists in Ishikawa cell line compared to MCF7 and T47D cells

d10

SRP000727

16

Alternative Isoform Regulation in Human Tissue Transcriptomes

d11

SRP007338

16

GSE30017: Widespread regulated alternative splicing of single codons accelerates proteome evolution

d12

SRP010166

16

GSE34914: Deep Sequence Analysis of non-small cell lung cancer: Integrated analysis of gene expression, alternative splicing, and single nucleotide variations in lung adenocarcinomas with and without oncogenic KRAS mutations

d13

ERP000710

12

Transciptome profiling of ovarian cancer cell lines

d14

SRP005411

11

RNA-Seq Quantification of the Complete Transcriptome of Genes Expressed in the Small Airway Epithelium of Nonsmokers and Smokers

d15

SRP006731

11

GSE29155: RNA-Seq anlalysis of prostate cancer cell lines using Next Generation Sequencing

d16

SRP013224

11

GSE38006: Next-generation sequencing reveals HIV-1-mediated suppression of T cell activation and RNA processing and the regulation of non-coding RNA expression in a CD4+ T cell line

d17

ERP000418

10

Gene expression profiles between normal and breast tumor genomes

d18

ERP000573

10

RNA and chromatin structure

d19

SRP010483

10

GSE35296: The human pancreatic islet transcriptome: impact of pro-inflammatory cytokines